Rutin - Compound Card

Rutin

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Rutin

Structure
Zoomed Structure
  • Family: Plantae - Rutaceae
  • Kingdom: Plantae
  • Class: Flavonoid
    • Subclass: Flavonoid Glycoside
Canonical Smiles Oc1cc(O)c2c(c1)oc(c(c2=O)O[C@@H]1O[C@H](CO[C@@H]2O[C@@H](C)[C@@H]([C@H]([C@H]2O)O)O)[C@H]([C@@H]([C@H]1O)O)O)c1ccc(c(c1)O)O
InChI InChI=1S/C27H30O16/c1-8-17(32)20(35)22(37)26(40-8)39-7-15-18(33)21(36)23(38)27(42-15)43-25-19(34)16-13(31)5-10(28)6-14(16)41-24(25)9-2-3-11(29)12(30)4-9/h2-6,8,15,17-18,20-23,26-33,35-38H,7H2,1H3/t8-,15+,17-,18+,20+,21-,22+,23+,26+,27-/m0/s1
InChIKey IKGXIBQEEMLURG-NVPNHPEKSA-N
Formula C27H30O16
HBA 16
HBD 10
MW 610.52
Rotatable Bonds 6
TPSA 269.43
LogP -1.69
Number Rings 5
Number Aromatic Rings 3
Heavy Atom Count 43
Formal Charge 0
Fraction CSP3 0.44
Exact Mass 610.15
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Viburnum tinus Adoxaceae Plantae 237959
2 Pistacia atlantica Anacardiaceae Plantae 434234
3 Pistacia khinjuk Anacardiaceae Plantae 434236
4 Pistacia lentiscus Anacardiaceae Plantae 371726
5 Gomphocarpus sinaicus Apocynaceae Plantae 2291033
6 Tabebuia argentea Bignoniaceae Plantae 3350745
7 Alkanna orientalis Boraginaceae Plantae 543563
8 Cleome species Capparaceae Plantae 25782
9 Capparis spinosa Capparaceae Plantae 65558
10 Anastatica hierochuntica Cruciferae-Brassicaceea Plantae 663965
11 Artemisia monosperma Asteraceae Plantae 72348
12 Artemisia herba-alba Asteraceae Plantae 72329
13 Artemisia monosperma Asteraceae Plantae 72348
14 Artemisia herba-alba Asteraceae Plantae 72329
15 Chrozophora tinctoria Euphorbiaceae Plantae
16 Euphorbia retusa Euphorbiaceae Plantae 1091645
17 Cotoneaster orbicularis Rosaceae Plantae 1851000
18 Crataegus sinaica Rosaceae Plantae 298646
19 Tribulus terrestris Tribulaceae Plantae 210369
20 Tribulus pentandrus Tribulaceae Plantae 1965241
21 Ammi visnaga Apiaceae Plantae 1053409
22 Bupleurum plantagineum Apiaceae Plantae 198849
23 Bupleurum fruticosum Apiaceae Plantae 48103
24 Juniperus phoenicea Cupressaceae Plantae 61308
25 Centaurea incana Asteraceae Plantae 405077
26 Centaurea alexandrina Asteraceae Plantae 363412
27 Centaurea calcitrapa Asteraceae Plantae 41511
28 Centaurea glomerata Asteraceae Plantae 363428
29 Conyza dioscoridis Asteraceae Plantae 264977
30 Cineraria abyssinica Asteraceae Plantae 189209
31 Ficus exasperata Moraceae Plantae 459060
32 Ficus sur Moraceae Plantae 100575
33 Ficus vallis-choudae Moraceae Plantae 182131
34 Ficus variifolia Moraceae Plantae 425835
35 Ficus barteri Moraceae Plantae 1191361
36 Ficus lingua Moraceae Plantae 309306
37 Ficus natalensis Moraceae Plantae 309307
38 Ficus sansibarica Moraceae Plantae 309319
39 Ficus saussureana Moraceae Plantae 309296
40 Moringa oleifera Moringaceae Plantae 3735
41 Maesa lanceolata Myrsinaceae Plantae 992730
42 Embelia schimperi Myrsinaceae Plantae 2595069
43 Embelia schimperi Myrsinaceae Plantae 2595069
44 Achyranthes aspera Amaranthaceae Plantae 240005
45 Oncoba spinosa Salicaceae Plantae 179733
46 Helianthemum sessiliflorum Cistaceae Plantae 2650562
47 Manihot esculenta Euphorbiaceae Plantae 3983
48 Quercus ilex Fagaceae Plantae 58334
49 Melia azedarach Meliaceae Plantae 155640
50 Citrus nobilis x Citrus deliciosa Rutaceae Plantae 558547

Showing of synonyms

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Pubchem: 5280805
Kegg Ligand: C05625
Chebi: 28527
Nmrshiftdb2: 60018758
Metabolights: MTBLC28527
Drugbank: DB01698
Pdb Ligand: RUT
CPRiL: 6850
Structure

SMILES: O1CCCCC1OCC2CCCC(O2)Oc(c3=O)c(-c4ccccc4)oc(c35)cccc5

Level: 3

Mol. Weight: 610.52 g/mol

Structure

SMILES: O1CCCCC1OCC2CCCC(O2)Oc(c3=O)coc(c34)cccc4

Level: 2

Mol. Weight: 610.52 g/mol

Structure

SMILES: c1cccc(c12)oc(-c3ccccc3)c(c2=O)OC4CCCCO4

Level: 2

Mol. Weight: 610.52 g/mol

Structure

SMILES: c1cccc(c12)occ(c2=O)OC3CCCCO3

Level: 1

Mol. Weight: 610.52 g/mol

Structure

SMILES: c1cccc(c12)oc(cc2=O)-c3ccccc3

Level: 1

Mol. Weight: 610.52 g/mol

Structure

SMILES: O1CCCCC1COC2CCCCO2

Level: 1

Mol. Weight: 610.52 g/mol

Structure

SMILES: c1cccc(c12)occc2=O

Level: 0

Mol. Weight: 610.52 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 610.52 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 610.52 g/mol

Anti-inflammatory
Anticancer
Antioxidant

Absorption

Caco-2 (logPapp)
-6.59
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
-5.53
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
8.84

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.74
Plasma Protein Binding
67.64
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
13.29
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-3.75
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.96
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
5.87
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-13209.48
Rat (Acute)
2.2
Rat (Chronic Oral)
4.45
Fathead Minnow
29.13
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
517.63
Hydration Free Energy
-3.1
Log(D) at pH=7.4
-0.96
Log(P)
-0.1
Log S
-4.5
Log(Vapor Pressure)
-14.63
Melting Point
212.94
pKa Acid
3.5
pKa Basic
8.17
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
HTH-type transcriptional regulator TtgR Q9AIU0 TTGR_PSEPT Pseudomonas putida 4 0.9051
HTH-type transcriptional regulator TtgR Q9AIU0 TTGR_PSEPT Pseudomonas putida 4 0.9051
Bromodomain adjacent to zinc finger domain protein 2B Q9UIF8 BAZ2B_HUMAN Homo sapiens 3 0.8896
Bromodomain adjacent to zinc finger domain protein 2B Q9UIF8 BAZ2B_HUMAN Homo sapiens 3 0.8896
Bromodomain-containing protein 2 P25440 BRD2_HUMAN Homo sapiens 3 0.8854
Bromodomain-containing protein 2 P25440 BRD2_HUMAN Homo sapiens 3 0.8854
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 3 0.8845
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 3 0.8845
Nitric oxide synthase oxygenase O34453 NOSO_BACSU Bacillus subtilis 4 0.8503
Nitric oxide synthase oxygenase O34453 NOSO_BACSU Bacillus subtilis 4 0.8503
Tyrosine-protein kinase JAK3 P52333 JAK3_HUMAN Homo sapiens 3 0.8351
Tyrosine-protein kinase JAK3 P52333 JAK3_HUMAN Homo sapiens 3 0.8351
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.8345
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.8345
Uracil phosphoribosyltransferase Q26998 UPP_TOXGO Toxoplasma gondii 3 0.8284
Uracil phosphoribosyltransferase Q26998 UPP_TOXGO Toxoplasma gondii 3 0.8284
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.8176
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.8176
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.8152
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.8152
Transcriptional regulator, PadR-like family A2RI36 A2RI36_LACLM Lactococcus lactis subsp. cremoris 3 0.7828
Transcriptional regulator, PadR-like family A2RI36 A2RI36_LACLM Lactococcus lactis subsp. cremoris 3 0.7828
Gag-Pol polyprotein P12497 POL_HV1N5 Human immunodeficiency virus type 1 group M subtype B 3 0.7731
Gag-Pol polyprotein P12497 POL_HV1N5 Human immunodeficiency virus type 1 group M subtype B 3 0.7731
Polyprotein Q80J95 Q80J95_9CALI Murine norovirus 1 3 0.7690
Polyprotein Q80J95 Q80J95_9CALI Murine norovirus 1 3 0.7690
Uracil phosphoribosyltransferase Q26998 UPP_TOXGO Toxoplasma gondii 3 0.7618
Uracil phosphoribosyltransferase Q26998 UPP_TOXGO Toxoplasma gondii 3 0.7618
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 4 0.7612
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 4 0.7612
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7587
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7587
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 4 0.7427
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 4 0.7427
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7393
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7393
Secoisolariciresinol dehydrogenase Q94KL8 SILD_PODPE Podophyllum peltatum 4 0.7264
Secoisolariciresinol dehydrogenase Q94KL8 SILD_PODPE Podophyllum peltatum 4 0.7264
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 4 0.7234
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 4 0.7234
Beta-glucuronidase P05804 BGLR_ECOLI Escherichia coli 3 0.7220
Beta-glucuronidase P05804 BGLR_ECOLI Escherichia coli 3 0.7220
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 4 0.7193
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 4 0.7193
Casein kinase II subunit alpha P68400 CSK21_HUMAN Homo sapiens 4 0.7146
Casein kinase II subunit alpha P68400 CSK21_HUMAN Homo sapiens 4 0.7146
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 4 0.7128
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 4 0.7128
Alpha amylase B8CZ54 B8CZ54_HALOH Halothermothrix orenii 3 0.7110
Alpha amylase B8CZ54 B8CZ54_HALOH Halothermothrix orenii 3 0.7110
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7056
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7056
CREB-binding protein Q92793 CBP_HUMAN Homo sapiens 3 0.7008
CREB-binding protein Q92793 CBP_HUMAN Homo sapiens 3 0.7008

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