Hecogenin-3-O-beta-D- xylopyranosyl-(1→3)-beta-D-glucopyranosyl-(1→2) [beta-D-xylopyranosyl (1→3)]-beta-D-glucopyranosyl (1→4)-beta-D-galactopyranoside - Compound Card

Hecogenin-3-O-beta-D- xylopyranosyl-(1→3)-beta-D-glucopyranosyl-(1→2) [beta-D-xylopyranosyl (1→3)]-beta-D-glucopyranosyl (1→4)-beta-D-galactopyranoside

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Hecogenin-3-O-beta-D- xylopyranosyl-(1→3)-beta-D-glucopyranosyl-(1→2) [beta-D-xylopyranosyl (1→3)]-beta-D-glucopyranosyl (1→4)-beta-D-galactopyranoside

Structure
Zoomed Structure
  • Family: Plantae - Agavaceae
  • Kingdom: Plantae
  • Class: Saponin
    • Subclass: Monodesmosidic Spirostanol Saponin
Canonical Smiles OCC1O[C@@H](O[C@H]2CC[C@]3(C(C2)CCC2C3CC(=O)[C@]3(C2CC2C3[C@H](C)C3(O2)OC[C@@H](C[C@@H]3O)C)C)C)[C@H](C([C@H]1O[C@@H]1OC(CO)[C@H](C([C@@H]1O[C@@H]1OC(CO)[C@H](C([C@@H]1O)O[C@@H]1OC[C@H](C([C@@H]1O)O)O)O)O[C@@H]1OC[C@H](C([C@@H]1O)O)O)O)O)O
InChI InChI=1S/C55H88O28/c1-19-9-33(62)55(74-16-19)20(2)34-28(83-55)11-25-23-6-5-21-10-22(7-8-53(21,3)24(23)12-32(61)54(25,34)4)75-50-42(70)39(67)44(31(15-58)78-50)79-52-47(46(38(66)30(14-57)77-52)81-49-41(69)36(64)27(60)18-73-49)82-51-43(71)45(37(65)29(13-56)76-51)80-48-40(68)35(63)26(59)17-72-48/h19-31,33-52,56-60,62-71H,5-18H2,1-4H3/t19-,20+,21?,22+,23?,24?,25?,26-,27-,28?,29?,30?,31?,33+,34?,35?,36?,37-,38-,39?,40+,41+,42+,43+,44+,45?,46?,47+,48+,49+,50-,51+,52+,53+,54-,55?/m1/s1
InChIKey KRXTVTCLGLJGNO-AGLLIFOXSA-N
Formula C55H88O28
HBA 28
HBD 15
MW 1197.28
Rotatable Bonds 13
TPSA 431.28
LogP -5.66
Number Rings 11
Number Aromatic Rings 0
Heavy Atom Count 83
Formal Charge 0
Fraction CSP3 0.98
Exact Mass 1196.55
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Agave macroacantha Agavaceae Plantae 382123

Showing of synonyms

  • Eskander J, Lavaud C and Harakat D. (2010). Steroidal saponins from the leaves of Agave macroacantha. Fitoterapia,2010,81,371-374. [View] [PubMed]
Pubchem: 162817617
Nmrshiftdb2: 70098258

No compound-protein relationship available.

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC8OCCC(OC9CCCCO9)C8OC(OCC1)CC1OC1CCCCO1

Level: 5

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC8OCCC(OC9CCCCO9)C8OC1CCCCO1

Level: 4

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC(OCCC8)C8OC(OCC9)CC9OC1CCCCO1

Level: 4

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2CC(OCC2)OC3C(OC4CCCCO4)CCOC3OC5CCCOC5

Level: 4

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC(OCCC8)C8OC9CCCCO9

Level: 3

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC(OCC8)CC8OC9CCCCO9

Level: 3

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2C(OC3CCCCO3)CCOC2OC4CCCOC4

Level: 3

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2C(COCC2)OC(OCC3)CC3OC4CCCCO4

Level: 3

Mol. Weight: 1197.28 g/mol

Structure

SMILES: C1OCCCC1OC(OCCC2)C2OC(OCC3)CC3OC4CCCCO4

Level: 3

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC(OC7)CCC7OC8CCCCO8

Level: 2

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2CC(OCC2)OC3CCCOC3

Level: 2

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2C(OCCC2)OC3CCCOC3

Level: 2

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC1OC2C(COCC2)OC3CCCCO3

Level: 2

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CC(CC6)OC7CCCCO7

Level: 1

Mol. Weight: 1197.28 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1197.28 g/mol

Structure

SMILES: C1COCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1197.28 g/mol

Structure

SMILES: O1CCCCC12CC3C4C(CC3O2)C5C(CC4=O)C6C(CC5)CCCC6

Level: 0

Mol. Weight: 1197.28 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1197.28 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-6.62
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
1085485039.66
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
141860076695.34

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.62
Plasma Protein Binding
33.21
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
1.23
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-3299344585.27
Biodegradation
Toxic
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-1347.54
Liver Injury II
Safe
hERG Blockers
Toxic
Daphnia Maga
4.05
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Toxic
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-257469204722651.2
Rat (Acute)
4.07
Rat (Chronic Oral)
552247.97
Fathead Minnow
325000265058.91
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
28958145139710.64
Hydration Free Energy
-2.92
Log(D) at pH=7.4
-16097836.91
Log(P)
-1876.27
Log S
-1.44
Log(Vapor Pressure)
-953577019096.71
Melting Point
-286703.62
pKa Acid
-6948311510.76
pKa Basic
-55898959.99
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7578
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7578
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7289
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7289
Cytochrome P450 monooxygenase Q5YNS8 Q5YNS8_NOCFA Nocardia farcinica 2 0.7254
Cytochrome P450 monooxygenase Q5YNS8 Q5YNS8_NOCFA Nocardia farcinica 2 0.7254
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 P04191 AT2A1_RABIT Oryctolagus cuniculus 4 0.7138
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 P04191 AT2A1_RABIT Oryctolagus cuniculus 4 0.7138

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