Stavaroside A - Compound Card

Stavaroside A

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Stavaroside A

Structure
Zoomed Structure
  • Family: Plantae - Apocynaceae
  • Kingdom: Plantae
  • Class: Steroid
    • Subclass: Pregnane Glycoside
Canonical Smiles COC1CC(C)(O[C@H]2CC[C@]3(C(=CC[C@@]4(C3C[C@@H](OC(=O)/C(=C\C)/C)[C@]3([C@]4(O)CC[C@@]3(O)C(OC(=O)c3ccccc3)C)C)O)C2)C)OC(C1OC1CC(OC)C(C(O1)C)OC1OC(C)C(C(C1O)OC)O)C
InChI InChI=1S/C55H82O18/c1-13-29(2)47(58)69-40-27-39-50(7)21-20-36(25-35(50)19-22-54(39,61)55(62)24-23-53(60,52(40,55)9)33(6)68-48(59)34-17-15-14-16-18-34)73-51(8)28-38(64-11)45(32(5)72-51)70-41-26-37(63-10)44(31(4)66-41)71-49-43(57)46(65-12)42(56)30(3)67-49/h13-19,30-33,36-46,49,56-57,60-62H,20-28H2,1-12H3/b29-13-/t30?,31?,32?,33?,36-,37?,38?,39?,40+,41?,42?,43?,44?,45?,46?,49?,50-,51?,52+,53+,54-,55+/m0/s1
InChIKey LMDPIOSHDLAOAV-YCSHHPRDSA-N
Formula C55H82O18
HBA 18
HBD 5
MW 1031.24
Rotatable Bonds 14
TPSA 236.82
LogP 4.97
Number Rings 8
Number Aromatic Rings 1
Heavy Atom Count 73
Formal Charge 0
Fraction CSP3 0.78
Exact Mass 1030.55
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Stapelia variegata Apocynaceae Plantae 141497

Showing of synonyms

  • Sayed KA, Halim AF, et al. (1995). Pregnane glycosides from Stapelia variegata. Phytochemistry,1995,39(2),395-403. [View] [PubMed]
Pubchem: 162904181
Nmrshiftdb2: 60053158

No compound-protein relationship available.

Structure

SMILES: c1ccccc1C(=O)OCC(CC2)C(C23)CCC4C3CC=C5C4CCC(C5)OC(OC6)CCC6OC(OC7)CCC7OC8CCCCO8

Level: 4

Mol. Weight: 1031.24 g/mol

Structure

SMILES: c1ccccc1C(=O)OCC2CCC(C23)C4C(CC3)C5C(=CC4)CC(CC5)OC(OC6)CCC6OC7CCCCO7

Level: 3

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC(OC5)CCC5OC(OC6)CCC6OC7CCCCO7

Level: 3

Mol. Weight: 1031.24 g/mol

Structure

SMILES: c1ccccc1C(=O)OCC2CCC(C23)C4C(CC3)C5C(=CC4)CC(CC5)OC6CCCCO6

Level: 2

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC(OC5)CCC5OC6CCCCO6

Level: 2

Mol. Weight: 1031.24 g/mol

Structure

SMILES: O1CCCCC1OC2CCC(OC2)OC3CCCOC3

Level: 2

Mol. Weight: 1031.24 g/mol

Structure

SMILES: c1ccccc1C(=O)OCC2CCC(C23)C4C(CC3)C5C(=CC4)CCCC5

Level: 1

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC5CCCCO5

Level: 1

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCCC4

Level: 0

Mol. Weight: 1031.24 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1031.24 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 1031.24 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.63
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
101820.930
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
13307555.74

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.610
Plasma Protein Binding
77.5
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
5.530
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-309504.310
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.630
Liver Injury II
Toxic
hERG Blockers
Toxic
Daphnia Maga
4.050
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-24152573831.040
Rat (Acute)
5.010
Rat (Chronic Oral)
53.300
Fathead Minnow
30487496.260
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Safe

General Properties

Boiling Point
2716490932.990
Hydration Free Energy
-2.920
Log(D) at pH=7.4
-1492.140
Log(P)
6.1
Log S
-4.94
Log(Vapor Pressure)
-89452576.42
Melting Point
186.6
pKa Acid
-651718.16
pKa Basic
-5224.89
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial Q0QF01 SDHA_PIG Sus scrofa 3 0.8498
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial Q0QF01 SDHA_PIG Sus scrofa 3 0.8498
Aldo-keto reductase family 1 member C3 P42330 AK1C3_HUMAN Homo sapiens 3 0.8425
Aldo-keto reductase family 1 member C3 P42330 AK1C3_HUMAN Homo sapiens 3 0.8425
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.8094
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.8094
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 3 0.7816
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 3 0.7816
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 3 0.7614
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 3 0.7614
Aldos-2-ulose dehydratase P84193 AUD_PHACH Phanerodontia chrysosporium 3 0.7381
Aldos-2-ulose dehydratase P84193 AUD_PHACH Phanerodontia chrysosporium 3 0.7381
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7165
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7165
Bifunctional epoxide hydrolase 2 P34913 HYES_HUMAN Homo sapiens 2 0.7156
Bifunctional epoxide hydrolase 2 P34913 HYES_HUMAN Homo sapiens 2 0.7156
Carbonic anhydrase 1 P00915 CAH1_HUMAN Homo sapiens 2 0.7037
Carbonic anhydrase 1 P00915 CAH1_HUMAN Homo sapiens 2 0.7037

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