Stavaroside B - Compound Card

Stavaroside B

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Stavaroside B

Structure
Zoomed Structure
  • Family: Plantae - Apocynaceae
  • Kingdom: Plantae
  • Class: Steroid
    • Subclass: Pregnane Glycoside
Canonical Smiles COC1CC(C)(O[C@H]2CC[C@]3(C(=CC[C@@]4(C3C[C@@H](OC(=O)/C(=C\C)/C)[C@]3([C@]4(O)CC[C@@]3(O)C(OC(=O)/C(=C/C)/C)C)C)O)C2)C)OC(C1OC1CC(OC)C(C(O1)C)OC1OC(C)C(C(C1O)OC)O)C
InChI InChI=1S/C53H84O18/c1-15-27(3)45(56)66-32(8)51(58)21-22-53(60)50(51,11)38(67-46(57)28(4)16-2)25-37-48(9)19-18-34(23-33(48)17-20-52(37,53)59)71-49(10)26-36(62-13)43(31(7)70-49)68-39-24-35(61-12)42(30(6)64-39)69-47-41(55)44(63-14)40(54)29(5)65-47/h15-17,29-32,34-44,47,54-55,58-60H,18-26H2,1-14H3/b27-15+,28-16-/t29?,30?,31?,32?,34-,35?,36?,37?,38+,39?,40?,41?,42?,43?,44?,47?,48-,49?,50+,51+,52-,53+/m0/s1
InChIKey NSBQSYNOPXEGHY-JSFIMCGVSA-N
Formula C53H84O18
HBA 18
HBD 5
MW 1009.24
Rotatable Bonds 14
TPSA 236.82
LogP 4.62
Number Rings 7
Number Aromatic Rings 0
Heavy Atom Count 71
Formal Charge 0
Fraction CSP3 0.85
Exact Mass 1008.57
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Stapelia variegata Apocynaceae Plantae 141497

Showing of synonyms

  • Sayed KA, Halim AF, et al. (1995). Pregnane glycosides from Stapelia variegata. Phytochemistry,1995,39(2),395-403. [View] [PubMed]
Pubchem: 162924400
Nmrshiftdb2: 60053156

No compound-protein relationship available.

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC(OC5)CCC5OC(OC6)CCC6OC7CCCCO7

Level: 3

Mol. Weight: 1009.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC(OC5)CCC5OC6CCCCO6

Level: 2

Mol. Weight: 1009.24 g/mol

Structure

SMILES: O1CCCCC1OC2CCC(OC2)OC3CCCOC3

Level: 2

Mol. Weight: 1009.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCC(C4)OC5CCCCO5

Level: 1

Mol. Weight: 1009.24 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1009.24 g/mol

Structure

SMILES: C1CCC(C12)CCC3C2CC=C4C3CCCC4

Level: 0

Mol. Weight: 1009.24 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1009.24 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.63
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
25235.700
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
3298760.24

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.620
Plasma Protein Binding
79.06
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
5.430
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-76722.160
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.750
Liver Injury II
Safe
hERG Blockers
Toxic
Daphnia Maga
4.050
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-5987092054.010
Rat (Acute)
4.670
Rat (Chronic Oral)
14.210
Fathead Minnow
7557438.370
Respiratory Disease
Safe
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Safe

General Properties

Boiling Point
673378243.960
Hydration Free Energy
-2.920
Log(D) at pH=7.4
-356.760
Log(P)
5.95
Log S
-4.77
Log(Vapor Pressure)
-22173907.76
Melting Point
184.87
pKa Acid
-161486.09
pKa Basic
-1282.34
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 4 0.7711
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 4 0.7711

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