3-O-alpha-L-arabinopyranosyl-echinocystic acid 28-O-alpha-L-rhamnopyranosyl-(1→4)-beta-D-gentiobiosyl ester - Compound Card

3-O-alpha-L-arabinopyranosyl-echinocystic acid 28-O-alpha-L-rhamnopyranosyl-(1→4)-beta-D-gentiobiosyl ester

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3-O-alpha-L-arabinopyranosyl-echinocystic acid 28-O-alpha-L-rhamnopyranosyl-(1→4)-beta-D-gentiobiosyl ester

Structure
Zoomed Structure
  • Family: Plantae - Araliaceae
  • Kingdom: Plantae
  • Class: Saponin
    • Subclass: Triterpenoid Saponin
Canonical Smiles OCC1O[C@@](O)(OCC2O[C@H](O)[C@H](C([C@H]2O)O)O)[C@H](C([C@]1(O)C1(O[C@H](C)[C@H]([C@@H]([C@@H]1O)O)O)OC(=O)[C@@]12CCC(C[C@H]2C2=CCC3[C@@]([C@@]2(C[C@H]1O)C)(C)CCC1[C@]3(C)CC[C@@H](C1(C)C)OC1OC[C@@H]([C@@H]([C@H]1O)O)O)(C)C)O)O
InChI InChI=1S/C53H86O24/c1-22-32(57)36(61)39(64)52(75-22,51(69)31(19-54)76-53(70,41(66)40(51)65)72-21-26-34(59)35(60)37(62)42(67)73-26)77-44(68)50-16-15-45(2,3)17-24(50)23-9-10-28-47(6)13-12-30(74-43-38(63)33(58)25(55)20-71-43)46(4,5)27(47)11-14-48(28,7)49(23,8)18-29(50)56/h9,22,24-43,54-67,69-70H,10-21H2,1-8H3/t22-,24+,25+,26?,27?,28?,29-,30+,31?,32-,33+,34+,35?,36+,37+,38-,39+,40?,41+,42+,43?,47+,48-,49-,50-,51+,52?,53+/m1/s1
InChIKey ORUFGBNJVBIIRG-RQHQAKKJSA-N
Formula C53H86O24
HBA 24
HBD 16
MW 1107.25
Rotatable Bonds 9
TPSA 405.36
LogP -3.37
Number Rings 9
Number Aromatic Rings 0
Heavy Atom Count 77
Formal Charge 0
Fraction CSP3 0.94
Exact Mass 1106.55
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Dizygotheca kerchoveana Araliaceae Plantae

Showing of synonyms

  • Melek FR, Miyase T, et al. (2004). Saponins and acylated saponins from Dizygotheca kerchoveana. Phytochemistry,2004,65(23),3089-3095. [View] [PubMed]
Pubchem: 162817440

No compound-protein relationship available.

Structure

SMILES: O1CCCCC1COC(OC2)CCC2C3(CCCCO3)OC(=O)C45C(CCCC5)C=6C(CC4)C7C(CC6)C8C(CC7)CC(CC8)OC9CCCCO9

Level: 4

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1CCCC(CC2)C1C(CC3)C2C(CC4)C=3C(CCCC5)C45C(=O)OC6(CCCCO6)C7CCC(OC7)OCC8CCCCO8

Level: 3

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1OCCCC1C2(CCCCO2)OC(=O)C34C(CCCC4)C=5C(CC3)C6C(CC5)C7C(CC6)CC(CC7)OC8CCCCO8

Level: 3

Mol. Weight: 1107.25 g/mol

Structure

SMILES: O1CCCCC1OC(=O)C23C(CCCC3)C=4C(CC2)C5C(CC4)C6C(CC5)CC(CC6)OC7CCCCO7

Level: 2

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1OCCCC1C2(CCCCO2)OC(=O)C34C(CCCC4)C=5C(CC3)C6C(CC5)C7C(CC6)CCCC7

Level: 2

Mol. Weight: 1107.25 g/mol

Structure

SMILES: O1CCCCC1COC(OC2)CCC2C3CCCCO3

Level: 2

Mol. Weight: 1107.25 g/mol

Structure

SMILES: O1CCCCC1OC(=O)C23C(CCCC3)C=4C(CC2)C5C(CC4)C6C(CC5)CCCC6

Level: 1

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(CC3)C5C(CC4)CC(CC5)OC6CCCCO6

Level: 1

Mol. Weight: 1107.25 g/mol

Structure

SMILES: O1CCCCC1COC2CCCCO2

Level: 1

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1OCCCC1C2CCCCO2

Level: 1

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(CC3)C5C(CC4)CCCC5

Level: 0

Mol. Weight: 1107.25 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1107.25 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-6.67
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
352051.11
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
46009961.55

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.69
Plasma Protein Binding
62.18
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
0.87
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-1070074.88
Biodegradation
Toxic
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.62
Liver Injury II
Safe
hERG Blockers
Safe
Daphnia Maga
4.05
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-83505869309.2
Rat (Acute)
3.62
Rat (Chronic Oral)
178.23
Fathead Minnow
105408357.75
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
9392087651.82
Hydration Free Energy
-2.92
Log(D) at pH=7.4
-5213.95
Log(P)
-0.09
Log S
-2.58
Log(Vapor Pressure)
-309276559.53
Melting Point
237.47
pKa Acid
-2253476.32
pKa Basic
-18114.81
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Fatty acid-binding protein, liver P80226 FABPL_CHICK Gallus gallus 3 0.8473
Fatty acid-binding protein, liver P80226 FABPL_CHICK Gallus gallus 3 0.8473

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