Naringin - Compound Card

Naringin

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Naringin

Structure
Zoomed Structure
  • Family: Plantae - Apiaceae
  • Kingdom: Plantae
  • Class: Flavonoid
    • Subclass: Flavonoid Glycoside
Canonical Smiles OC[C@H]1O[C@@H](Oc2cc(O)c3c(c2)O[C@@H](CC3=O)c2ccc(cc2)O)[C@@H]([C@H]([C@@H]1O)O)O[C@@H]1O[C@@H](C)[C@@H]([C@H]([C@H]1O)O)O
InChI InChI=1S/C27H32O14/c1-10-20(32)22(34)24(36)26(37-10)41-25-23(35)21(33)18(9-28)40-27(25)38-13-6-14(30)19-15(31)8-16(39-17(19)7-13)11-2-4-12(29)5-3-11/h2-7,10,16,18,20-30,32-36H,8-9H2,1H3/t10-,16-,18+,20-,21+,22+,23-,24+,25+,26-,27+/m0/s1
InChIKey DFPMSGMNTNDNHN-ZPHOTFPESA-N
Formula C27H32O14
HBA 14
HBD 8
MW 580.54
Rotatable Bonds 6
TPSA 225.06
LogP -1.17
Number Rings 5
Number Aromatic Rings 2
Heavy Atom Count 41
Formal Charge 0
Fraction CSP3 0.52
Exact Mass 580.18
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Coriandrum sativum Apiaceae Plantae 4047

Showing of synonyms

  • Msaada K, Ben Jemia M, et al. (2014). Antioxidant activity of methanolic extracts from three coriander (Coriandrum sativum L.) fruit varieties. Arabian Journal of Chemistry,2014, in press. [View]
Pubchem: 442428
Kegg Ligand: C09789
Chebi: 28819
Nmrshiftdb2: 60022485
Metabolights: MTBLC28819
Drugbank: DB16859
Pdb Ligand: ZWN
Bindingdb: 50241582
CPRiL: 55843
Structure

SMILES: c1ccccc1C(CC2=O)Oc(c23)cc(cc3)OC(OCCC4)C4OC5CCCCO5

Level: 3

Mol. Weight: 580.54 g/mol

Structure

SMILES: O=C1CCOc(c12)cc(cc2)OC(OCCC3)C3OC4CCCCO4

Level: 2

Mol. Weight: 580.54 g/mol

Structure

SMILES: c1ccccc1C(CC2=O)Oc(c23)cc(cc3)OC4CCCCO4

Level: 2

Mol. Weight: 580.54 g/mol

Structure

SMILES: O=C1CCOc(c12)cc(cc2)OC3CCCCO3

Level: 1

Mol. Weight: 580.54 g/mol

Structure

SMILES: c1cccc(c12)OC(CC2=O)c3ccccc3

Level: 1

Mol. Weight: 580.54 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 580.54 g/mol

Structure

SMILES: c1cccc(c12)OCCC2=O

Level: 0

Mol. Weight: 580.54 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 580.54 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 580.54 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-6.77
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
-5.190
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
3.7

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.850
Plasma Protein Binding
75.38
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
9.450
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-3.570
Biodegradation
Toxic
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.570
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
5.460
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-6205.610
Rat (Acute)
2.430
Rat (Chronic Oral)
4.080
Fathead Minnow
13.420
Respiratory Disease
Safe
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
519.270
Hydration Free Energy
-2.940
Log(D) at pH=7.4
0.380
Log(P)
-0.37
Log S
-3.95
Log(Vapor Pressure)
-12.18
Melting Point
189.56
pKa Acid
4.31
pKa Basic
5.88
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Histone deacetylase 4 P56524 HDAC4_HUMAN Homo sapiens 3 0.9394
Histone deacetylase 4 P56524 HDAC4_HUMAN Homo sapiens 3 0.9394
Death-associated protein kinase 1 P53355 DAPK1_HUMAN Homo sapiens 4 0.9224
Death-associated protein kinase 1 P53355 DAPK1_HUMAN Homo sapiens 4 0.9224
Flavoredoxin Q72HI0 Q72HI0_THET2 Thermus thermophilus 3 0.9218
Flavoredoxin Q72HI0 Q72HI0_THET2 Thermus thermophilus 3 0.9218
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 4 0.8791
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 4 0.8791
Pantothenate synthetase P9WIL5 PANC_MYCTU Mycobacterium tuberculosis 3 0.8659
Pantothenate synthetase P9WIL5 PANC_MYCTU Mycobacterium tuberculosis 3 0.8659
Aldos-2-ulose dehydratase P84193 AUD_PHACH Phanerodontia chrysosporium 3 0.8284
Aldos-2-ulose dehydratase P84193 AUD_PHACH Phanerodontia chrysosporium 3 0.8284
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.8180
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.8180
Anthocyanidin 3-O-glucosyltransferase UFGT P51094 UFOG_VITVI Vitis vinifera 4 0.8066
Anthocyanidin 3-O-glucosyltransferase UFGT P51094 UFOG_VITVI Vitis vinifera 4 0.8066
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.8047
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.8047
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.7872
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.7872
Methionine aminopeptidase 1 P53582 MAP11_HUMAN Homo sapiens 3 0.7870
Methionine aminopeptidase 1 P53582 MAP11_HUMAN Homo sapiens 3 0.7870
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7764
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7764
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7705
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7705
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7627
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7627
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7622
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7622
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7614
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7614
Peroxisome proliferator-activated receptor gamma P37231 PPARG_HUMAN Homo sapiens 4 0.7613
Peroxisome proliferator-activated receptor gamma P37231 PPARG_HUMAN Homo sapiens 4 0.7613
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7599
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7599
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7574
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7574
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7513
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7513
Threonine--tRNA ligase P0A8M3 SYT_ECOLI Escherichia coli 3 0.7459
Threonine--tRNA ligase P0A8M3 SYT_ECOLI Escherichia coli 3 0.7459
beta-glucosidase Q92AS9 Q92AS9_LISIN Listeria innocua serovar 6a 3 0.7432
beta-glucosidase Q92AS9 Q92AS9_LISIN Listeria innocua serovar 6a 3 0.7432
Beta-galactoside-specific lectin 1 P81446 ML1_VISAL Viscum album 3 0.7427
Beta-galactoside-specific lectin 1 P81446 ML1_VISAL Viscum album 3 0.7427
Serine/threonine-protein kinase Chk1 O14757 CHK1_HUMAN Homo sapiens 3 0.7420
Serine/threonine-protein kinase Chk1 O14757 CHK1_HUMAN Homo sapiens 3 0.7420
Valacyclovir hydrolase Q86WA6 BPHL_HUMAN Homo sapiens 3 0.7360
Valacyclovir hydrolase Q86WA6 BPHL_HUMAN Homo sapiens 3 0.7360
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7229
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 4 0.7229
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.7214
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.7214
YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein Q5SHN1 Q5SHN1_THET8 Thermus thermophilus 3 0.7135
YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein Q5SHN1 Q5SHN1_THET8 Thermus thermophilus 3 0.7135
23S rRNA (guanine(745)-N(1))-methyltransferase P36999 RLMA_ECOLI Escherichia coli 3 0.7120
23S rRNA (guanine(745)-N(1))-methyltransferase P36999 RLMA_ECOLI Escherichia coli 3 0.7120
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7115
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 4 0.7115
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7089
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7089
Serine/threonine-protein kinase 10 O94804 STK10_HUMAN Homo sapiens 3 0.7088
Serine/threonine-protein kinase 10 O94804 STK10_HUMAN Homo sapiens 3 0.7088
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Q3JRA0 ISPF_BURP1 Burkholderia pseudomallei 4 0.7079
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Q3JRA0 ISPF_BURP1 Burkholderia pseudomallei 4 0.7079
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7063
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7063
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 5 0.7011
Poly [ADP-ribose] polymerase tankyrase-2 Q9H2K2 TNKS2_HUMAN Homo sapiens 5 0.7011
Small heat shock protein StHsp14.0 Q970D9 Q970D9_SULTO Sulfurisphaera tokodaii 3 0.7010
Small heat shock protein StHsp14.0 Q970D9 Q970D9_SULTO Sulfurisphaera tokodaii 3 0.7010

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