(-)-semiglabrin - Compound Card

(-)-semiglabrin

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(-)-semiglabrin

Structure
Zoomed Structure
  • Family: Plantae - Leguminosae/Fabaceae
  • Kingdom: Plantae
  • Class: Flavonoid
    • Subclass: Flavone
Canonical Smiles CC(=O)O[C@H]1[C@H]2[C@@H](OC1(C)C)Oc1c2c2oc(cc(=O)c2cc1)c1ccccc1
InChI InChI=1S/C23H20O6/c1-12(24)26-21-19-18-16(28-22(19)29-23(21,2)3)10-9-14-15(25)11-17(27-20(14)18)13-7-5-4-6-8-13/h4-11,19,21-22H,1-3H3/t19-,21-,22+/m0/s1
InChIKey XTIQPKJOGKMOSY-ILWGZMRPSA-N
Formula C23H20O6
HBA 6
HBD 0
MW 392.41
Rotatable Bonds 2
TPSA 74.97
LogP 4.0
Number Rings 5
Number Aromatic Rings 3
Heavy Atom Count 29
Formal Charge 0
Fraction CSP3 0.3
Exact Mass 392.13
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Tephrosia purpurea Leguminosae/Fabaceae Plantae 228354

Showing of synonyms

  • Juma WP, Akala HM, et al. (2011). Terpurinflavone: An antiplasmodial flavone from the stem of Tephrosia Purpurea.. Phytochemistry Letters,2011,4(2),176-178. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: O1CCC2C1Oc(c23)ccc4c3oc(cc4=O)-c5ccccc5

Level: 1

Mol. Weight: 392.41 g/mol

Structure

SMILES: O1CCC2C1Oc(c23)ccc4c3occc4=O

Level: 0

Mol. Weight: 392.41 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 392.41 g/mol

Anti-plasmodial

Absorption

Caco-2 (logPapp)
-4.87
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.5
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-1.12

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
1.4
Plasma Protein Binding
94.21
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
7.25
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
1.77
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.39
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
6.89
Micronucleos
Toxic
NR-AhR
Toxic
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-27.06
Rat (Acute)
3.46
Rat (Chronic Oral)
1.36
Fathead Minnow
5.02
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Toxic
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Toxic

General Properties

Boiling Point
481.59
Hydration Free Energy
-5.14
Log(D) at pH=7.4
3.66
Log(P)
3.93
Log S
-5.14
Log(Vapor Pressure)
-8.8
Melting Point
179.06
pKa Acid
8.86
pKa Basic
3.01
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Glycogen phosphorylase, muscle form P00489 PYGM_RABIT Oryctolagus cuniculus 3 0.9298
Glycogen phosphorylase, muscle form P00489 PYGM_RABIT Oryctolagus cuniculus 3 0.9298
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9Y233 PDE10_HUMAN Homo sapiens 3 0.8800
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9Y233 PDE10_HUMAN Homo sapiens 3 0.8800
Mycocyclosin synthase P9WPP7 CP121_MYCTU Mycobacterium tuberculosis 3 0.8757
Mycocyclosin synthase P9WPP7 CP121_MYCTU Mycobacterium tuberculosis 3 0.8757
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 3 0.8550
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 3 0.8550
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.8514
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.8514
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.8355
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.8355
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.8154
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.8154
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 3 0.8125
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 3 0.8125
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.8041
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.8041
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7967
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 3 0.7967
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 3 0.7856
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 3 0.7856
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 3 0.7620
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 3 0.7620
Streptavidin P22629 SAV_STRAV Streptomyces avidinii 3 0.7595
Streptavidin P22629 SAV_STRAV Streptomyces avidinii 3 0.7595
Poly [ADP-ribose] polymerase 1 P09874 PARP1_HUMAN Homo sapiens 4 0.7583
Poly [ADP-ribose] polymerase 1 P09874 PARP1_HUMAN Homo sapiens 4 0.7583
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7519
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7519
Multidrug transporter MdfA P0AEY8 MDFA_ECOLI Escherichia coli 3 0.7484
Multidrug transporter MdfA P0AEY8 MDFA_ECOLI Escherichia coli 3 0.7484
Anthocyanidin 3-O-glucosyltransferase UFGT P51094 UFOG_VITVI Vitis vinifera 4 0.7482
Anthocyanidin 3-O-glucosyltransferase UFGT P51094 UFOG_VITVI Vitis vinifera 4 0.7482
Bromodomain adjacent to zinc finger domain protein 2B Q9UIF8 BAZ2B_HUMAN Homo sapiens 2 0.7444
Bromodomain adjacent to zinc finger domain protein 2B Q9UIF8 BAZ2B_HUMAN Homo sapiens 2 0.7444
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.7398
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.7398
Cytochrome P450 S6BVH1 S6BVH1_RHOER Rhodococcus erythropolis 3 0.7383
Cytochrome P450 S6BVH1 S6BVH1_RHOER Rhodococcus erythropolis 3 0.7383
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.7352
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.7352
Streptogramin A acetyltransferase P50870 VATD_ENTFC Enterococcus faecium 3 0.7328
Streptogramin A acetyltransferase P50870 VATD_ENTFC Enterococcus faecium 3 0.7328
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7320
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7320
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7204
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7204
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7192
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7192
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7187
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7187
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7184
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7184
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7181
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7181
Glucose-1-phosphate thymidylyltransferase Q9HU22 Q9HU22_PSEAE Pseudomonas aeruginosa 3 0.7154
Glucose-1-phosphate thymidylyltransferase Q9HU22 Q9HU22_PSEAE Pseudomonas aeruginosa 3 0.7154
Peptidyl-prolyl cis-trans isomerase FKBP5 Q13451 FKBP5_HUMAN Homo sapiens 4 0.7138
Peptidyl-prolyl cis-trans isomerase FKBP5 Q13451 FKBP5_HUMAN Homo sapiens 4 0.7138
Enoyl-[acyl-carrier-protein] reductase [NADH] P9WGR1 INHA_MYCTU Mycobacterium tuberculosis 3 0.7100
Enoyl-[acyl-carrier-protein] reductase [NADH] P9WGR1 INHA_MYCTU Mycobacterium tuberculosis 3 0.7100
cGMP-specific 3',5'-cyclic phosphodiesterase O76074 PDE5A_HUMAN Homo sapiens 3 0.7087
cGMP-specific 3',5'-cyclic phosphodiesterase O76074 PDE5A_HUMAN Homo sapiens 3 0.7087
Neuropilin-1 O14786 NRP1_HUMAN Homo sapiens 3 0.7060
Neuropilin-1 O14786 NRP1_HUMAN Homo sapiens 3 0.7060
Chymotrypsinogen A P00766 CTRA_BOVIN Bos taurus 3 0.7055
Chymotrypsinogen A P00766 CTRA_BOVIN Bos taurus 3 0.7055
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 3 0.7039
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 3 0.7039
Estrogen receptor P03372 ESR1_HUMAN Homo sapiens 3 0.7026
Estrogen receptor P03372 ESR1_HUMAN Homo sapiens 3 0.7026
Leucoanthocyanidin dioxygenase Q96323 LDOX_ARATH Arabidopsis thaliana 3 0.7017
Leucoanthocyanidin dioxygenase Q96323 LDOX_ARATH Arabidopsis thaliana 3 0.7017

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