Methyl 5,10-dihydroxy-7-methoxy-1,1,3a-trimethyl-1a,2,3,3a,10c,10d-hexahydro-1H-4-oxacyclobuta[cd]indeno[5,6-a]naphthalene-9-carboxylate - Compound Card

Methyl 5,10-dihydroxy-7-methoxy-1,1,3a-trimethyl-1a,2,3,3a,10c,10d-hexahydro-1H-4-oxacyclobuta[cd]indeno[5,6-a]naphthalene-9-carboxylate

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Methyl 5,10-dihydroxy-7-methoxy-1,1,3a-trimethyl-1a,2,3,3a,10c,10d-hexahydro-1H-4-oxacyclobuta[cd]indeno[5,6-a]naphthalene-9-carboxylate

Structure
Zoomed Structure
  • Family: Plantae - Rubiaceae
  • Kingdom: Plantae
  • Class: Quinone
    • Subclass: Naphthohydroquinone
Canonical Smiles COC(=O)c1cc(OC)c2c(c1O)c1c(c(c2)O)O[C@@]2([C@@H]3[C@H]1C([C@@H]3CC2)(C)C)C
InChI InChI=1S/C23H26O6/c1-22(2)12-6-7-23(3)17(12)18(22)16-15-10(8-13(24)20(16)29-23)14(27-4)9-11(19(15)25)21(26)28-5/h8-9,12,17-18,24-25H,6-7H2,1-5H3/t12-,17+,18+,23+/m1/s1
InChIKey TVIHKWWLPPRESU-OWMRGQTCSA-N
Formula C23H26O6
HBA 6
HBD 2
MW 398.46
Rotatable Bonds 2
TPSA 85.22
LogP 4.35
Number Rings 5
Number Aromatic Rings 2
Heavy Atom Count 29
Formal Charge 0
Fraction CSP3 0.52
Exact Mass 398.17
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Pentas bussei Rubiaceae Plantae 387051
2 Pentas bussei Rubiaceae Plantae 387051

Showing of synonyms

  • Bukuru J, De Kimpe N, et al. (2003). Isolation and structural elucidation of natural products from Pentas bussei K. Krause, Pentas lanceolata (Forsk.) Deflers and Pentas parvifolia Hiern (Rubiaceae). Ph.D. Thesis, University of Ghent, Faculty of Bioscience Engineering, Belgium,2003. [View] [PubMed]
  • Bukuru J, Van TN, et al. (2003). New pentacyclic cyclol-type naphthohydroquinone from the roots of Pentas bussei. Tetrahedron,2003,59(31),5905-5908. [View] [PubMed]
Pubchem: 12114951

No compound-protein relationship available.

Structure

SMILES: C12C3CC1c4c5c(cccc5)ccc4OC2CC3

Level: 0

Mol. Weight: 398.46 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.52
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.680
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-1.67

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
1.230
Plasma Protein Binding
83.5
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Inhibitor
CYP 2C9 Substrate
Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
12.520
Organic Cation Transporter 2
Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
1.460
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Toxic
Maximum Tolerated Dose
0.290
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
6.570
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-18.530
Rat (Acute)
2.480
Rat (Chronic Oral)
2.780
Fathead Minnow
4.060
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Toxic

General Properties

Boiling Point
442.550
Hydration Free Energy
-5.580
Log(D) at pH=7.4
5.210
Log(P)
5.89
Log S
-6.37
Log(Vapor Pressure)
-7.96
Melting Point
230.43
pKa Acid
7.73
pKa Basic
3.86
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Nuclear receptor subfamily 4immunitygroup A member 1 P22736 NR4A1_HUMAN Homo sapiens 3 0.8882
Nuclear receptor subfamily 4immunitygroup A member 1 P22736 NR4A1_HUMAN Homo sapiens 3 0.8882
Polymerase acidic protein Q5EP34 Q5EP34_9INFA Influenza A virus 3 0.8788
Polymerase acidic protein Q5EP34 Q5EP34_9INFA Influenza A virus 3 0.8788
Polymerase acidic protein C3W5S0 C3W5S0_I09A0 Influenza A virus 2 0.7263
Polymerase acidic protein C3W5S0 C3W5S0_I09A0 Influenza A virus 2 0.7263
Anthranilate phosphoribosyltransferase P9WFX5 TRPD_MYCTU Mycobacterium tuberculosis 3 0.7255
Anthranilate phosphoribosyltransferase P9WFX5 TRPD_MYCTU Mycobacterium tuberculosis 3 0.7255
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 3 0.7122
Endoplasmin P41148 ENPL_CANLF Canis lupus familiaris 3 0.7122

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