Spirosta-5,25(27)-diene-1-beta,3-beta-diol-1-O-alpha-L-rhamnopyranosyl-(1→2)-beta-D-fucopyranoside - Compound Card

Spirosta-5,25(27)-diene-1-beta,3-beta-diol-1-O-alpha-L-rhamnopyranosyl-(1→2)-beta-D-fucopyranoside

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Spirosta-5,25(27)-diene-1-beta,3-beta-diol-1-O-alpha-L-rhamnopyranosyl-(1→2)-beta-D-fucopyranoside

Structure
Zoomed Structure
  • Family: Plantae - Agavaceae
  • Kingdom: Plantae
  • Class: Steroid
    • Subclass: Sterol Glycoside
Canonical Smiles O[C@H]1C[C@@H](O[C@@H]2OC(C)[C@@H]([C@@H](C2O[C@@H]2OC(C)[C@@H]([C@@H](C2O)O)O)O)O)[C@]2(C(=CCC3C2CC[C@]2(C3CC3C2[C@H](C)[C@]2(O3)CCC(=C)CO2)C)C1)C
InChI InChI=1S/C39H60O12/c1-17-9-12-39(46-16-17)18(2)28-26(51-39)15-25-23-8-7-21-13-22(40)14-27(38(21,6)24(23)10-11-37(25,28)5)49-36-34(32(44)30(42)20(4)48-36)50-35-33(45)31(43)29(41)19(3)47-35/h7,18-20,22-36,40-45H,1,8-16H2,2-6H3/t18-,19?,20?,22+,23?,24?,25?,26?,27+,28?,29-,30-,31-,32-,33?,34?,35-,36-,37-,38-,39+/m0/s1
InChIKey KFXFIROSEPLSQG-YJXRSPJSSA-N
Formula C39H60O12
HBA 12
HBD 6
MW 720.9
Rotatable Bonds 4
TPSA 176.76
LogP 2.31
Number Rings 8
Number Aromatic Rings 0
Heavy Atom Count 51
Formal Charge 0
Fraction CSP3 0.9
Exact Mass 720.41
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Cordyline fruticosa Agavaceae Plantae 39501

Showing of synonyms

  • Fouedjou RT, Teponno RB, et al. (2014). Steroidal saponins from the leaves of Cordyline fruticosa (L.) A. Chev. and their cytotoxic and antimicrobial activity. Phytochemistry Letters, 2014, 7, 62-68. [View]

No compound-protein relationship available.

Structure

SMILES: O1CC(=C)CCC12CC3C4C(CC3O2)C5C(CC4)C6C(=CC5)CCCC6OC(OCCC7)C7OC8CCCCO8

Level: 2

Mol. Weight: 720.9 g/mol

Structure

SMILES: O1CC(=C)CCC12CC3C4C(CC3O2)C5C(CC4)C6C(=CC5)CCCC6OC7CCCCO7

Level: 1

Mol. Weight: 720.9 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 720.9 g/mol

Structure

SMILES: O1CC(=C)CCC12CC3C4C(CC3O2)C5C(CC4)C6C(=CC5)CCCC6

Level: 0

Mol. Weight: 720.9 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 720.9 g/mol

Cytotoxic

Absorption

Caco-2 (logPapp)
-6.06
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-0.18
Human Oral Bioavailability 50%
Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
703.47

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.81
Plasma Protein Binding
80.43
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
1.66
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-15.17
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-1.37
Liver Injury II
Safe
hERG Blockers
Safe
Daphnia Maga
6.65
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-1278240.74
Rat (Acute)
4.11
Rat (Chronic Oral)
3.74
Fathead Minnow
1620.27
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Safe

General Properties

Boiling Point
141464.48
Hydration Free Energy
-2.92
Log(D) at pH=7.4
3.91
Log(P)
3.77
Log S
-3.63
Log(Vapor Pressure)
-4553.52
Melting Point
228.72
pKa Acid
-3.02
pKa Basic
4.89
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Neocarzinostatin P0A3R9 NCZS_STRCZ Streptomyces carzinostaticus 3 0.8311
Neocarzinostatin P0A3R9 NCZS_STRCZ Streptomyces carzinostaticus 3 0.8311
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7830
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7830
Aldo-keto reductase family 1 member C1 Q04828 AK1C1_HUMAN Homo sapiens 2 0.7636
Aldo-keto reductase family 1 member C1 Q04828 AK1C1_HUMAN Homo sapiens 2 0.7636
Prostaglandin reductase 2 Q8N8N7 PTGR2_HUMAN Homo sapiens 2 0.7284
Prostaglandin reductase 2 Q8N8N7 PTGR2_HUMAN Homo sapiens 2 0.7284
Mycinamicin III 3''-O-methyltransferase Q49492 MYCF_MICGR Micromonospora griseorubida 4 0.7040
Mycinamicin III 3''-O-methyltransferase Q49492 MYCF_MICGR Micromonospora griseorubida 4 0.7040
Nuclear receptor ROR-gamma P51449 RORG_HUMAN Homo sapiens 2 0.7005
Nuclear receptor ROR-gamma P51449 RORG_HUMAN Homo sapiens 2 0.7005

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