(2R,3S,4S,5R,6R,8S,9R,10R,11S,13R,14R,17R,1′S,2′R,3′R,5′R)-4,8,11,14-tetrahydroxy-5,6-epoxy-12-oxo- 2-O,3-O-[(2′,3′-methylendioxy)-4′,6′-didesoxyhexosulose]-card-20 (22)-enolide - Compound Card

(2R,3S,4S,5R,6R,8S,9R,10R,11S,13R,14R,17R,1′S,2′R,3′R,5′R)-4,8,11,14-tetrahydroxy-5,6-epoxy-12-oxo- 2-O,3-O-[(2′,3′-methylendioxy)-4′,6′-didesoxyhexosulose]-card-20 (22)-enolide

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(2R,3S,4S,5R,6R,8S,9R,10R,11S,13R,14R,17R,1′S,2′R,3′R,5′R)-4,8,11,14-tetrahydroxy-5,6-epoxy-12-oxo- 2-O,3-O-[(2′,3′-methylendioxy)-4′,6′-didesoxyhexosulose]-card-20 (22)-enolide

Structure
Zoomed Structure
  • Family: Plantae - Celastraceae
  • Kingdom: Plantae
  • Class: Steroid
Canonical Smiles CC1C[C@H]2OCO[C@]32[C@@H](O1)O[C@H]1[C@H](O3)C[C@]2([C@]3([C@H]1O)O[C@@H]3C[C@@]1(C2[C@H](O)C(=O)[C@]2([C@]1(O)CC[C@@H]2C1=CC(=O)OC1)C)O)C
InChI InChI=1S/C30H38O13/c1-12-6-16-30(39-11-38-16)24(40-12)41-20-15(42-30)8-25(2)21-19(32)22(33)26(3)14(13-7-18(31)37-10-13)4-5-28(26,36)27(21,35)9-17-29(25,43-17)23(20)34/h7,12,14-17,19-21,23-24,32,34-36H,4-6,8-11H2,1-3H3/t12?,14-,15-,16-,17-,19+,20+,21?,23+,24+,25-,26+,27+,28-,29+,30+/m1/s1
InChIKey OFYFSRGXSZVPKF-NSWPUUHSSA-N
Formula C30H38O13
HBA 13
HBD 4
MW 606.62
Rotatable Bonds 1
TPSA 182.97
LogP -0.79
Number Rings 9
Number Aromatic Rings 0
Heavy Atom Count 43
Formal Charge 0
Fraction CSP3 0.87
Exact Mass 606.23
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Salacia staudtiana Celastraceae Plantae 662028

Showing of synonyms

  • Kamtcha DW, Tene M, et al. (2018). Cardenolides and dihydro-β-agarofuran sesquiterpenes from the seeds of Salacia staudtiana.. Fitoterapia,2018, 131, 174-181. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: C1OC(=O)C=C1C(CC2)C(C2C3CC(C456)O6)C(=O)CC3C4CC7C(C5)OC8C9(O7)C(CCO8)OCO9

Level: 1

Mol. Weight: 606.62 g/mol

Structure

SMILES: C123C(O3)CC4C5C(CCC5)C(=O)CC4C1CC6C(C2)OC7C8(O6)C(CCO7)OCO8

Level: 0

Mol. Weight: 606.62 g/mol

Structure

SMILES: O=C1C=CCO1

Level: 0

Mol. Weight: 606.62 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.48
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.88
Human Oral Bioavailability 50%
Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
15.45

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.31
Plasma Protein Binding
51.68
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
4.02
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-2.29
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-1.07
Liver Injury II
Safe
hERG Blockers
Toxic
Daphnia Maga
5.97
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Toxic
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-29870.99
Rat (Acute)
5.16
Rat (Chronic Oral)
3.0
Fathead Minnow
52.35
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Toxic
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Toxic

General Properties

Boiling Point
769.58
Hydration Free Energy
-2.92
Log(D) at pH=7.4
0.91
Log(P)
-0.68
Log S
-2.82
Log(Vapor Pressure)
-13.35
Melting Point
219.55
pKa Acid
4.4
pKa Basic
1.79
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Xylose isomerase P24300 XYLA_STRRU Streptomyces rubiginosus 3 0.8807

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