Cylindracid B - Compound Card

Cylindracid B

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Cylindracid B

Structure
Zoomed Structure
  • Family: Plantae - Gramineae
  • Kingdom: Plantae
  • Class: Flavonoid
    • Subclass: Prenylated Flavonoid
Canonical Smiles OC(=O)C[C@H]1[C@@](C)(O)C=CC(=O)C1(C)C
InChI InChI=1S/C11H16O4/c1-10(2)7(6-9(13)14)11(3,15)5-4-8(10)12/h4-5,7,15H,6H2,1-3H3,(H,13,14)/t7-,11+/m1/s1
InChIKey PGEWVCWJJGIZQJ-HQJQHLMTSA-N
Formula C11H16O4
HBA 3
HBD 2
MW 212.24
Rotatable Bonds 2
TPSA 74.6
LogP 0.99
Number Rings 1
Number Aromatic Rings 0
Heavy Atom Count 15
Formal Charge 0
Fraction CSP3 0.64
Exact Mass 212.1
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Imperata cylindrica Gramineae Plantae 80369

Showing of synonyms

  • Nago RDT, Nayim P, et al. (2021). Prenylated Flavonoids and C-15 Isoprenoid Analogues with Antibacterial Properties from the Whole Plant of Imperata cylindrica (L.) Raeusch (Gramineae). Molecules. 2021, 26(16), 4717. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: O=C1C=CCCC1

Level: 0

Mol. Weight: 212.24 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.04
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.76
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-2.87

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
0.18
Plasma Protein Binding
42.46
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
5.15
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-0.15
Biodegradation
Toxic
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Toxic
Maximum Tolerated Dose
0.99
Liver Injury II
Safe
hERG Blockers
Safe
Daphnia Maga
3.56
Micronucleos
Safe
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
3.0
Rat (Acute)
1.74
Rat (Chronic Oral)
1.9
Fathead Minnow
3.72
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
320.68
Hydration Free Energy
-9.2
Log(D) at pH=7.4
-1.61
Log(P)
0.62
Log S
-0.73
Log(Vapor Pressure)
-6.38
Melting Point
152.11
pKa Acid
4.5
pKa Basic
6.76
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
ADP-ribosylation factor 1 P84080 ARF1_BOVIN Bos taurus 3 0.8719
Trichothecene 15-O-acetyltransferase TRI3 Q9C1B7 TRI3_FUSSP Fusarium sporotrichioides 3 0.8675
Reaction center protein L chain P0C0Y7 RCEH_RHOSH Rhodobacter sphaeroides 3 0.8270
Pyridoxal kinase, putative C4LVZ4 C4LVZ4_ENTHI Entamoeba histolytica 3 0.8262
Lysozyme C II P11941 LYSC2_ONCMY Oncorhynchus mykiss 3 0.7981
Ornithine transcarbamylase, mitochondrial P00480 OTC_HUMAN Homo sapiens 3 0.7844
Phospholipase A2, major isoenzyme P00592 PA21B_PIG Sus scrofa 3 0.7799
Type IV / VI secretion system DotU domain-containing protein Q9KN50 Q9KN50_VIBCH Vibrio cholerae serotype O1 2 0.7738
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 3 0.7614
Deacetoxycephalosporin C synthase P18548 CEFE_STRCL Streptomyces clavuligerus 3 0.7611
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 3 0.7595
Photosynthetic reaction center cytochrome c subunit P07173 CYCR_BLAVI Blastochloris viridis 3 0.7544
Chorismate mutase AroH P19080 AROH_BACSU Bacillus subtilis 3 0.7518
N-alpha-acetyltransferase 50 Q9GZZ1 NAA50_HUMAN Homo sapiens 3 0.7486
Liver carboxylesterase 1 P23141 EST1_HUMAN Homo sapiens 2 0.7438
ADP-ribosylation factor 1 P84077 ARF1_HUMAN Homo sapiens 2 0.7085

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