Piceid - Compound Card

Piceid

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Piceid

Structure
Zoomed Structure
  • Family: Plantae - Rubiaceae
  • Kingdom: Plantae
  • Class: Phenolic
    • Subclass: Phenol Glycoside Derivative
Canonical Smiles OC[C@H]1O[C@@H](Oc2cc(/C=C/c3ccc(cc3)O)cc(c2)O)[C@@H]([C@H]([C@@H]1O)O)O
InChI InChI=1S/C20H22O8/c21-10-16-17(24)18(25)19(26)20(28-16)27-15-8-12(7-14(23)9-15)2-1-11-3-5-13(22)6-4-11/h1-9,16-26H,10H2/b2-1+/t16-,17-,18+,19-,20-/m1/s1
InChIKey HSTZMXCBWJGKHG-CUYWLFDKSA-N
Formula C20H22O8
HBA 8
HBD 6
MW 390.39
Rotatable Bonds 5
TPSA 139.84
LogP 0.45
Number Rings 3
Number Aromatic Rings 2
Heavy Atom Count 28
Formal Charge 0
Fraction CSP3 0.3
Exact Mass 390.13
Number of Lipinski Rule Violations 1
# Species Family Kingdom NCBI Taxonomy ID
1 Ficus bubu Moraceae Plantae 378014
2 Nauclea pobeguinii Rubiaceae Plantae 43525

Showing of synonyms

  • Kuete V, Sandjo LP, et al. (2015). Cytotoxicity of selected Cameroonian medicinal plants and Nauclea pobeguinii towards multi-factorial drug-resistant cancer cells.. BMC complementary and alternative medicine,2015, 15, 309. [View] [PubMed]
  • Mbosso ETJ, Kamdem ML, et al. (2015). In Vitro Evaluation of Antimicrobial and Antiproliferative Activities for Compounds Isolated from the Ficus Bubu Warb. (Moraceae) Fruits: Chemotaxonomic Significance. Drug Delivery Letters,2015, 5(2), 122-131. [View]
Pubchem: 5281718
Kegg Ligand: C10275
Chebi: 8198
Nmrshiftdb2: 60021301
Metabolights: MTBLC8198
Drugbank: DB11263
Bindingdb: 60919
CPRiL: 55313
Structure

SMILES: c1ccccc1C=Cc2cc(ccc2)OC3CCCCO3

Level: 2

Mol. Weight: 390.39 g/mol

Structure

SMILES: c1ccccc1C=Cc2ccccc2

Level: 1

Mol. Weight: 390.39 g/mol

Structure

SMILES: c1ccccc1OC2CCCCO2

Level: 1

Mol. Weight: 390.39 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 390.39 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 390.39 g/mol

Cytotoxic

Absorption

Caco-2 (logPapp)
-6.56
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-5.020
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-1.43

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.980
Plasma Protein Binding
81.69
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
11.630
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Toxic
Avian
Safe
Bee
Toxic
Bioconcentration Factor
-1.170
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.840
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
4.620
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-10.040
Rat (Acute)
2.220
Rat (Chronic Oral)
3.880
Fathead Minnow
4.160
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Toxic
SR-ATAD5
Toxic
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
507.940
Hydration Free Energy
-11.080
Log(D) at pH=7.4
1.230
Log(P)
0.73
Log S
-3.39
Log(Vapor Pressure)
-11.79
Melting Point
193.31
pKa Acid
6.23
pKa Basic
4.01
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Histone deacetylase 4 P56524 HDAC4_HUMAN Homo sapiens 3 0.9599
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.9116
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.9103
Heat shock protein HSP 90-beta P08238 HS90B_HUMAN Homo sapiens 3 0.9011
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 4 0.9009
17beta-hydroxysteroid dehydrogenase O93874 O93874_COCLU Cochliobolus lunatus 3 0.9009
Mitogen-activated protein kinase 1 P28482 MK01_HUMAN Homo sapiens 3 0.8974
Flavin-dependent monooxygenase Q93L51 TETX_BACT4 Bacteroides thetaiotaomicron 3 0.8761
Death-associated protein kinase 1 P53355 DAPK1_HUMAN Homo sapiens 4 0.8744
Tyrosine-protein kinase JAK3 P52333 JAK3_HUMAN Homo sapiens 3 0.8727
Nuclear receptor subfamily 4immunitygroup A member 1 P22736 NR4A1_HUMAN Homo sapiens 3 0.8705
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 4 0.8507
Dihydrofolate reductase P00378 DYR_CHICK Gallus gallus 3 0.8329
2',3'-cyclic-nucleotide 3'-phosphodiesterase P16330 CN37_MOUSE Mus musculus 3 0.8312
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.8238
Purine nucleoside phosphorylase DeoD-type P0ABP9 DEOD_ECO57 Escherichia coli O157:H7 3 0.8193
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.8113
Serpin domain-containing protein H0ZQY2 H0ZQY2_TAEGU Taeniopygia guttata 3 0.8070
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7990
Phospholipase A2, major isoenzyme P00592 PA21B_PIG Sus scrofa 3 0.7973
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7938
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 4 0.7929
Beta-secretase 2 Q9Y5Z0 BACE2_HUMAN Homo sapiens 3 0.7884
beta-glucosidase Q92AS9 Q92AS9_LISIN Listeria innocua serovar 6a 3 0.7849
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.7824
Polyprotein Q80J95 Q80J95_9CALI Murine norovirus 1 3 0.7769
Peroxisome proliferator-activated receptor gamma P37231 PPARG_HUMAN Homo sapiens 4 0.7682
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9QYJ6 PDE10_RAT Rattus norvegicus 3 0.7678
5-methylthioadenosine/S-adenosylhomocysteine deaminase Q7NZ90 Q7NZ90_CHRVO Chromobacterium violaceum 3 0.7659
IOMT 3 Q06YR3 Q06YR3_MEDTR Medicago truncatula 3 0.7626
Ras-related protein Ral-B P11234 RALB_HUMAN Homo sapiens 3 0.7607
Rhodopsin kinase GRK1 P28327 GRK1_BOVIN Bos taurus 3 0.7484
Transthyretin P02767 TTHY_RAT Rattus norvegicus 3 0.7480
Xylose isomerase P24300 XYLA_STRRU Streptomyces rubiginosus 3 0.7473
Glucan 1,3-beta-glucosidase P29717 EXG1_CANAL Candida albicans 3 0.7435
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.7410
Acetylcholinesterase P04058 ACES_TETCF Tetronarce californica 3 0.7386
Serine/threonine-protein kinase Chk2 O96017 CHK2_HUMAN Homo sapiens 3 0.7384
Mitogen-activated protein kinase 8 P45983 MK08_HUMAN Homo sapiens 3 0.7346
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 4 0.7336
HTH-type transcriptional regulator TtgR Q9AIU0 TTGR_PSEPT Pseudomonas putida 3 0.7309
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase O33877 FABA_PSEAE Pseudomonas aeruginosa 3 0.7296
Polyribonucleotide nucleotidyltransferase A7ZS61 PNP_ECO24 Escherichia coli O139:H28 3 0.7288
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7237
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7224
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7216
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.7216
NAD-capped RNA hydrolase NudC P32664 NUDC_ECOLI Escherichia coli 3 0.7213
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 4 0.7211
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 3 0.7211
Ephrin type-A receptor 2 P29317 EPHA2_HUMAN Homo sapiens 3 0.7209
Mitogen-activated protein kinase 14 Q16539 MK14_HUMAN Homo sapiens 3 0.7126
Genome polyprotein P26663 POLG_HCVBK Hepatitis C virus genotype 1b 3 0.7119
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7110
17beta-hydroxysteroid dehydrogenase O93874 O93874_COCLU Cochliobolus lunatus 3 0.7090
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7089
Glutathione S-transferase F2 P46422 GSTF2_ARATH Arabidopsis thaliana 3 0.7075
72 kDa type IV collagenase P08253 MMP2_HUMAN Homo sapiens 3 0.7042
Gag-Pol polyprotein P12497 POL_HV1N5 Human immunodeficiency virus type 1 group M subtype B 2 0.7015
Death-associated protein kinase 1 P53355 DAPK1_HUMAN Homo sapiens 3 0.7010
Serine/threonine-protein kinase Chk1 O14757 CHK1_HUMAN Homo sapiens 3 0.7008

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