Gracidiol - Compound Card

Gracidiol

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Gracidiol

Structure
Zoomed Structure
  • Family: Plantae - Annonaceae
  • Kingdom: Plantae
  • Class: Isoprenoid
    • Subclass: Meroisoprenoid
Canonical Smiles O=C(OC[C@@]([C@H](COC(=O)c1ccccc1)O)(O)C)/C=C/c1ccccc1
InChI InChI=1S/C21H22O6/c1-21(25,15-27-19(23)13-12-16-8-4-2-5-9-16)18(22)14-26-20(24)17-10-6-3-7-11-17/h2-13,18,22,25H,14-15H2,1H3/b13-12+/t18-,21-/m0/s1
InChIKey PGZIYXWUICGPMX-AHBRUNABSA-N
Formula C21H22O6
HBA 6
HBD 2
MW 370.4
Rotatable Bonds 8
TPSA 93.06
LogP 2.21
Number Rings 2
Number Aromatic Rings 2
Heavy Atom Count 27
Formal Charge 0
Fraction CSP3 0.24
Exact Mass 370.14
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Sphaerocoryne gracilis Annonaceae Plantae 489348

Showing of synonyms

  • Maeda G, Munissi JJE, et al. (2020). A Meroisoprenoid, Heptenolides, and C‐Benzylated Flavonoids from Sphaerocoryne gracilis ssp. Gracilis. Journal of natural products,2020, 83(2), 316-322. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: c1ccccc1C=CC(=O)OCCCCOC(=O)c2ccccc2

Level: 1

Mol. Weight: 370.4 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 370.4 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.57
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.43
Human Oral Bioavailability 50%
Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-2.81

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
0.88
Plasma Protein Binding
64.5
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
3.73
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Safe
Bioconcentration Factor
0.33
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.78
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
6.61
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-2.92
Rat (Acute)
1.81
Rat (Chronic Oral)
2.89
Fathead Minnow
4.63
Respiratory Disease
Safe
Skin Sensitisation
Safe
SR-ARE
Toxic
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
380.55
Hydration Free Energy
-8.32
Log(D) at pH=7.4
3.12
Log(P)
3.08
Log S
-3.61
Log(Vapor Pressure)
-8.06
Melting Point
137.83
pKa Acid
9.3
pKa Basic
0.52
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Lactoperoxidase P80025 PERL_BOVIN Bos taurus 3 0.9580
Insulin-degrading enzyme P14735 IDE_HUMAN Homo sapiens 3 0.9369
Prothrombin P00734 THRB_HUMAN Homo sapiens 3 0.9179
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.9101
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 3 0.9075
Neocarzinostatin P0A3R9 NCZS_STRCZ Streptomyces carzinostaticus 3 0.9072
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.9065
Bifunctional epoxide hydrolase 2 P34913 HYES_HUMAN Homo sapiens 4 0.9056
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.9033
Bifunctional protein GlmU P43889 GLMU_HAEIN Haemophilus influenzae 3 0.9030
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial Q33862 Q33862_ASCSU Ascaris suum 3 0.8999
Flavin-dependent monooxygenase Q93L51 TETX_BACT4 Bacteroides thetaiotaomicron 3 0.8732
Methionine aminopeptidase P0AE18 MAP1_ECOLI Escherichia coli 3 0.8666
Type IV / VI secretion system DotU domain-containing protein Q9KN50 Q9KN50_VIBCH Vibrio cholerae serotype O1 3 0.8628
Tetracycline repressor protein class B from transposon Tn10 P04483 TETR2_ECOLX Escherichia coli 3 0.8609
Antitumor antibiotic C-1027 apoprotein Q06110 CAGA_STRGL Streptomyces globisporus 3 0.8508
Pheromone-binding protein ASP1 Q9U9J6 Q9U9J6_APIME Apis mellifera 3 0.8487
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.8460
Protease O38896 O38896_9HIV1 Human immunodeficiency virus 1 3 0.8450
Purine nucleoside phosphorylase Q8I3X4 Q8I3X4_PLAF7 Plasmodium falciparum 3 0.8433
Thermolysin P00800 THER_BACTH Bacillus thermoproteolyticus 3 0.8427
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.8424
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.8390
Trichothecene 15-O-acetyltransferase TRI3 Q9C1B7 TRI3_FUSSP Fusarium sporotrichioides 3 0.8375
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.8348
Peptidyl-prolyl cis-trans isomerase FKBP1A P62942 FKB1A_HUMAN Homo sapiens 3 0.8286
Nucleoside 2-deoxyribosyltransferase Q8RLY5 Q8RLY5_LACHE Lactobacillus helveticus 3 0.8225
Methionine aminopeptidase 1 P53582 MAP11_HUMAN Homo sapiens 3 0.8203
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.8164
Stimulator of interferon genes protein Q86WV6 STING_HUMAN Homo sapiens 3 0.8155
Tetracycline repressor protein class D P0ACT4 TETR4_ECOLX Escherichia coli 3 0.8104
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 3 0.8052
Tetracycline repressor protein class D P0ACT4 TETR4_ECOLX Escherichia coli 3 0.8028
Macrophage metalloelastase P39900 MMP12_HUMAN Homo sapiens 3 0.8013
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.8010
HTH-type transcriptional regulator EthR P9WMC1 ETHR_MYCTU Mycobacterium tuberculosis 3 0.8005
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7992
prolyl oligopeptidase Q9X6R4 Q9X6R4_AERCA Aeromonas caviae 2 0.7971
Tetracycline repressor protein class D P0ACT4 TETR4_ECOLX Escherichia coli 3 0.7933
Insulin-degrading enzyme P14735 IDE_HUMAN Homo sapiens 2 0.7887
Genome polyprotein P26663 POLG_HCVBK Hepatitis C virus genotype 1b 3 0.7876
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7862
Bromodomain-containing protein 2 P25440 BRD2_HUMAN Homo sapiens 3 0.7860
Nickel-binding periplasmic protein P33590 NIKA_ECOLI Escherichia coli 2 0.7857
Mitogen-activated protein kinase 14 Q16539 MK14_HUMAN Homo sapiens 3 0.7848
Disintegrin and metalloproteinase domain-containing protein 17 P78536 ADA17_HUMAN Homo sapiens 3 0.7842
Fatty acid-binding protein, adipocyte P15090 FABP4_HUMAN Homo sapiens 2 0.7832
Glucan 1,3-beta-glucosidase P29717 EXG1_CANAL Candida albicans 3 0.7817
Chloramphenicol 3-O phosphotransferase Q56148 CPT_STRVP Streptomyces venezuelae 3 0.7803
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Q3JRA0 ISPF_BURP1 Burkholderia pseudomallei 3 0.7794
Oxygen-insensitive NAD(P)H nitroreductase P38489 NFSB_ECOLI Escherichia coli 4 0.7789
Nickel-binding periplasmic protein P33590 NIKA_ECOLI Escherichia coli 2 0.7778
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.7777
Streptogramin A acetyltransferase P50870 VATD_ENTFC Enterococcus faecium 3 0.7774
2',3'-cyclic-nucleotide 3'-phosphodiesterase P16330 CN37_MOUSE Mus musculus 3 0.7772
Class B acid phosphatase Q540U1 APHA_SALTM Salmonella typhimurium 2 0.7758
Tetracycline repressor protein class D P0ACT4 TETR4_ECOLX Escherichia coli 3 0.7755
Polyribonucleotide nucleotidyltransferase A7ZS61 PNP_ECO24 Escherichia coli O139:H28 3 0.7746
Carnitine O-palmitoyltransferase 2, mitochondrial P18886 CPT2_RAT Rattus norvegicus 3 0.7743
Mitogen-activated protein kinase 8 P45983 MK08_HUMAN Homo sapiens 3 0.7730
Mitogen-activated protein kinase 14 Q16539 MK14_HUMAN Homo sapiens 3 0.7723
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7711
Lethal factor P15917 LEF_BACAN Bacillus anthracis 3 0.7700
Agglutinin alpha chain P18674 LECA_MACPO Maclura pomifera 3 0.7697
Caffeoyl-CoA O-methyltransferase Q40313 CAMT_MEDSA Medicago sativa 3 0.7695
Polymerase acidic protein P03433 PA_I34A1 Influenza A virus 2 0.7669
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 2 0.7669
N-alpha-acetyltransferase 50 Q9GZZ1 NAA50_HUMAN Homo sapiens 3 0.7655
Sodium-dependent dopamine transporter Q7K4Y6 DAT_DROME Drosophila melanogaster 2 0.7654
Histone deacetylase-like amidohydrolase Q70I53 HDAH_ALCSD Alcaligenes sp.) 2 0.7636
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7630
Glycogen synthase Q9V2J8 Q9V2J8_PYRAB Pyrococcus abyssi 3 0.7628
Ferrochelatase, mitochondrial P22830 HEMH_HUMAN Homo sapiens 3 0.7625
Copper-transporting ATPase Q97UU7 Q97UU7_SACS2 Saccharolobus solfataricus 3 0.7621
Ribosomal protein S6 kinase beta-1 P23443 KS6B1_HUMAN Homo sapiens 2 0.7606
Alpha-ketoglutarate-dependent dioxygenase FTO Q9C0B1 FTO_HUMAN Homo sapiens 3 0.7593
Purine nucleoside phosphorylase DeoD-type P0ABP9 DEOD_ECO57 Escherichia coli O157:H7 3 0.7589
Tetracycline repressor protein class H P51561 TETR8_PASMD Pasteurella multocida 3 0.7586
Glycogen synthase Q9V2J8 Q9V2J8_PYRAB Pyrococcus abyssi 3 0.7576
NAD-capped RNA hydrolase NudC P32664 NUDC_ECOLI Escherichia coli 4 0.7566
Photosynthetic reaction center cytochrome c subunit P07173 CYCR_BLAVI Blastochloris viridis 2 0.7565
Adenosine kinase Q9TVW2 ADK_TOXGO Toxoplasma gondii 3 0.7546
Mitogen-activated protein kinase 8 P45983 MK08_HUMAN Homo sapiens 3 0.7519
Lysozyme C II P11941 LYSC2_ONCMY Oncorhynchus mykiss 3 0.7511
Orf1ab polyprotein Q6T1E9 Q6T1E9_CVHSA SARS coronavirus CUHK-L2 3 0.7495
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7492
Protease O09893 O09893_9HIV1 Human immunodeficiency virus 1 3 0.7491
Steroid Delta-isomerase P00947 SDIS_COMTE Comamonas testosteroni 2 0.7474
Beta-1 adrenergic receptor P07700 ADRB1_MELGA Meleagris gallopavo 2 0.7445
Nuclear receptor subfamily 1 group I member 2 O75469 NR1I2_HUMAN Homo sapiens 3 0.7438
Plasma membrane ATPase Q42932 Q42932_NICPL Nicotiana plumbaginifolia 2 0.7431
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7425
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.7424
Botulinum neurotoxin type A P0DPI0 BXA1_CLOBO Clostridium botulinum 3 0.7423
2',3'-cyclic-nucleotide 3'-phosphodiesterase P16330 CN37_MOUSE Mus musculus 2 0.7417
Collagenase 3 P45452 MMP13_HUMAN Homo sapiens 5 0.7401
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial Q0QF01 SDHA_PIG Sus scrofa 3 0.7393
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7390
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 2 0.7387
Chymotrypsinogen A P00766 CTRA_BOVIN Bos taurus 3 0.7380
Camphor 5-monooxygenase P00183 CPXA_PSEPU Pseudomonas putida 3 0.7373
Flavoredoxin Q72HI0 Q72HI0_THET2 Thermus thermophilus 2 0.7368
Multidrug transporter MdfA P0AEY8 MDFA_ECOLI Escherichia coli 3 0.7355
Mitogen-activated protein kinase 8 P45983 MK08_HUMAN Homo sapiens 3 0.7339
Insulin-like growth factor 1 receptor P08069 IGF1R_HUMAN Homo sapiens 2 0.7337
Multidrug efflux pump subunit AcrB P31224 ACRB_ECOLI Escherichia coli 3 0.7332
2-phospho-L-lactate transferase Q8PVT6 COFD_METMA Methanosarcina mazei 2 0.7327
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.7323
Endothiapepsin P11838 CARP_CRYPA Cryphonectria parasitica 3 0.7322
NADPH-dependent oxidoreductase 2-alkenal reductase Q39172 AER_ARATH Arabidopsis thaliana 2 0.7308
Glutamate receptor 2 P19491 GRIA2_RAT Rattus norvegicus 2 0.7306
Urokinase-type plasminogen activator P00749 UROK_HUMAN Homo sapiens 3 0.7305
Disks large homolog 1 Q12959 DLG1_HUMAN Homo sapiens 3 0.7303
2',3'-cyclic-nucleotide 3'-phosphodiesterase P16330 CN37_MOUSE Mus musculus 2 0.7301
Acetylcholinesterase P04058 ACES_TETCF Tetronarce californica 3 0.7299
Probable nicotinate-nucleotide adenylyltransferase C3L5T6 NADD_BACAC Bacillus anthracis 2 0.7292
F420-dependent methylenetetrahydromethanopterin dehydrogenase P94951 MTD_METKA Methanopyrus kandleri 2 0.7277
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase O33877 FABA_PSEAE Pseudomonas aeruginosa 3 0.7267
Multidrug efflux pump subunit AcrB P31224 ACRB_ECOLI Escherichia coli 3 0.7263
Kinesin-like protein KIF11 P52732 KIF11_HUMAN Homo sapiens 3 0.7250
Vitamin D-binding protein P02774 VTDB_HUMAN Homo sapiens 2 0.7246
Tetracycline repressor protein class D P0ACT4 TETR4_ECOLX Escherichia coli 3 0.7242
Methionine aminopeptidase 2 P9WK19 MAP12_MYCTU Mycobacterium tuberculosis 3 0.7241
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7241
Bifunctional epoxide hydrolase 2 P34913 HYES_HUMAN Homo sapiens 2 0.7239
Carbonic anhydrase 1 P00915 CAH1_HUMAN Homo sapiens 2 0.7231
Dipeptidyl peptidase 4 P14740 DPP4_RAT Rattus norvegicus 2 0.7228
Pantothenate kinase P9WPA7 COAA_MYCTU Mycobacterium tuberculosis 3 0.7223
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7222
Neprilysin P08049 NEP_RABIT Oryctolagus cuniculus 4 0.7212
2',3'-cyclic-nucleotide 3'-phosphodiesterase P16330 CN37_MOUSE Mus musculus 2 0.7212
L-lactate dehydrogenase A chain P04642 LDHA_RAT Rattus norvegicus 2 0.7193
Dipeptidyl peptidase 4 P27487 DPP4_HUMAN Homo sapiens 2 0.7192
Beta-1 adrenergic receptor P07700 ADRB1_MELGA Meleagris gallopavo 2 0.7189
Major pollen allergen Bet v 1-A P15494 BEV1A_BETPN Betula pendula 2 0.7184
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase Q9TQS6 DHDH_MACFA Macaca fascicularis 2 0.7179
Pheromone-binding protein ASP1 Q9U9J6 Q9U9J6_APIME Apis mellifera 2 0.7178
ATP-dependent molecular chaperone HSP82 P02829 HSP82_YEAST Saccharomyces cerevisiae 2 0.7175
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7157
Dihydrofolate reductase P00378 DYR_CHICK Gallus gallus 2 0.7153
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 2 0.7152
Acetylcholine-binding protein P58154 ACHP_LYMST Lymnaea stagnalis 3 0.7147
Annexin A5 P08758 ANXA5_HUMAN Homo sapiens 2 0.7141
Serine/threonine-protein kinase VRK1 Q99986 VRK1_HUMAN Homo sapiens 3 0.7140
Chloramphenicol 3-O phosphotransferase Q56148 CPT_STRVP Streptomyces venezuelae 3 0.7139
5-methylthioadenosine/S-adenosylhomocysteine deaminase Q7NZ90 Q7NZ90_CHRVO Chromobacterium violaceum 3 0.7135
Phospholipase A2, major isoenzyme P00592 PA21B_PIG Sus scrofa 3 0.7134
Acidic phospholipase A2 3 P60045 PA2A3_NAJSG Naja sagittifera 2 0.7130
NADH:flavin oxidoreductase Sye1 Q8EEC8 Q8EEC8_SHEON Shewanella oneidensis 2 0.7128
Stromelysin-1 P08254 MMP3_HUMAN Homo sapiens 2 0.7128
Adenosine 5'-monophosphoramidase HINT1 P49773 HINT1_HUMAN Homo sapiens 3 0.7127
Mitogen-activated protein kinase 1 P28482 MK01_HUMAN Homo sapiens 2 0.7122
Gag-Pol polyprotein P03367 POL_HV1BR Human immunodeficiency virus type 1 group M subtype B 2 0.7116
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 3 0.7113
Sulfide-quinone reductase B7JBP8 SQRD_ACIF2 Acidithiobacillus ferrooxidans) 2 0.7111
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.7110
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7103
Pyridoxal kinase P82197 PDXK_SHEEP Ovis aries 3 0.7102
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 P04191 AT2A1_RABIT Oryctolagus cuniculus 3 0.7101
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 2 0.7101
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.7100
Carbonic anhydrase 4 Q64444 CAH4_MOUSE Mus musculus 2 0.7099
Adenosine 5'-monophosphoramidase HINT1 P80912 HINT1_RABIT Oryctolagus cuniculus 3 0.7087
mRNA cleavage and polyadenylation factor CLP1 Q08685 CLP1_YEAST Saccharomyces cerevisiae 2 0.7081
Genome polyprotein P26663 POLG_HCVBK Hepatitis C virus genotype 1b 3 0.7079
Penicillin V acylase P12256 PAC_LYSSH Lysinibacillus sphaericus 3 0.7067
Kinesin-like protein KIF11 P52732 KIF11_HUMAN Homo sapiens 3 0.7065
Pheromone-binding protein ASP1 Q9U9J6 Q9U9J6_APIME Apis mellifera 2 0.7056
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7056
Unconventional myosin-Va Q02440 MYO5A_CHICK Gallus gallus 2 0.7037
Methionine aminopeptidase P0AE18 MAP1_ECOLI Escherichia coli 2 0.7036
Glucan 1,3-beta-glucosidase P29717 EXG1_CANAL Candida albicans 3 0.7034
Phospholipase A2, major isoenzyme P00592 PA21B_PIG Sus scrofa 2 0.7031
Nickel-binding periplasmic protein P33590 NIKA_ECOLI Escherichia coli 2 0.7031
Histone deacetylase 8 Q9BY41 HDAC8_HUMAN Homo sapiens 3 0.7028
Dipeptidyl peptidase 4 P27487 DPP4_HUMAN Homo sapiens 2 0.7021
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7015
Chitinase Q54276 Q54276_SERMA Serratia marcescens 2 0.7014
NAD(P) transhydrogenase subunit alpha part 1 Q2RSB2 PNTAA_RHORT Rhodospirillum rubrum 3 0.7002
Prothrombin P00734 THRB_HUMAN Homo sapiens 2 0.7002

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