Vincristine - Compound Card

Vincristine

Select a section from the left sidebar

Vincristine

Structure
Zoomed Structure
  • Family: Plantae - Apocynaceae
  • Kingdom: Plantae
  • Class: Alkaloid
    • Subclass: Indole Alkaloid
Canonical Smiles O=CN1c2cc(OC)c(cc2[C@]23[C@@H]1[C@@](O)(C(=O)OC)[C@H](OC(=O)C)[C@]1([C@@H]3N(CC2)CC=C1)CC)[C@]1(C[C@@H]2CN(CCc3c1[nH]c1c3cccc1)C[C@](C2)(O)CC)C(=O)OC
InChI InChI=1S/C46H56N4O10/c1-7-42(55)22-28-23-45(40(53)58-5,36-30(14-18-48(24-28)25-42)29-12-9-10-13-33(29)47-36)32-20-31-34(21-35(32)57-4)50(26-51)38-44(31)16-19-49-17-11-15-43(8-2,37(44)49)39(60-27(3)52)46(38,56)41(54)59-6/h9-13,15,20-21,26,28,37-39,47,55-56H,7-8,14,16-19,22-25H2,1-6H3/t28-,37+,38-,39-,42+,43-,44-,45+,46+/m1/s1
InChIKey OGWKCGZFUXNPDA-XQKSVPLYSA-N
Formula C46H56N4O10
HBA 12
HBD 3
MW 824.97
Rotatable Bonds 8
TPSA 171.17
LogP 3.52
Number Rings 9
Number Aromatic Rings 3
Heavy Atom Count 60
Formal Charge 0
Fraction CSP3 0.57
Exact Mass 824.4
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Catharanthus roseus Apocynaceae Plantae 4058

Showing of synonyms

  • Hanafy M, Matter M, et al. (2016). Production of indole alkaloids in hairy root cultures of Catharanthus roseus L. and their antimicrobial activity. South African Journal of Botany, 2016, 105, 9-18. [View]
Pubchem: 5978
Kegg Ligand: C07204
Chebi: 28445
Nmrshiftdb2: 60072790
Metabolights: MTBLC28445
Bindingdb: 50139772
CPRiL: 166
Structure

SMILES: C1CN(C2)CCCC2CC(c(c1c34)[nH]c3cccc4)c(c5)ccc(c5C678)NC7CCC9C6N(CC8)CC=C9

Level: 1

Mol. Weight: 824.97 g/mol

Structure

SMILES: c1cccc2[nH]c(c3c12)CCC4CCCN(C4)CC3

Level: 0

Mol. Weight: 824.97 g/mol

Structure

SMILES: c1cccc(c1C234)NC3CCC5C2N(CC4)CC=C5

Level: 0

Mol. Weight: 824.97 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.94
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
667.88
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
88047.51

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.5
Plasma Protein Binding
70.92
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
2.75
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Toxic
Avian
Toxic
Bee
Toxic
Bioconcentration Factor
-2050.89
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.94
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
4.0
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-159802124.78
Rat (Acute)
3.0
Rat (Chronic Oral)
2.52
Fathead Minnow
201720.34
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Toxic
SR-ATAD5
Toxic
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Toxic

General Properties

Boiling Point
17968763.73
Hydration Free Energy
-2.92
Log(D) at pH=7.4
2.61
Log(P)
3.87
Log S
-4.33
Log(Vapor Pressure)
-591608.94
Melting Point
248.52
pKa Acid
-4245.62
pKa Basic
-2.53
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Gag-Pol polyprotein P05896 POL_SIVM1 Simian immunodeficiency virus 4 0.8877
Peptidyl-prolyl cis-trans isomerase FKBP1A P62942 FKB1A_HUMAN Homo sapiens 3 0.7969
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 4 0.7866
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.7712
Nuclear receptor subfamily 4immunitygroup A member 1 P22736 NR4A1_HUMAN Homo sapiens 3 0.7641
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 4 0.7587
Serpin domain-containing protein H0ZQY2 H0ZQY2_TAEGU Taeniopygia guttata 3 0.7427
Vitamin D-binding protein P02774 VTDB_HUMAN Homo sapiens 2 0.7307
Flavin reductase like domain-containing protein Q4UKE8 Q4UKE8_RICFE Rickettsia felis 3 0.7255
Chitinase Q54276 Q54276_SERMA Serratia marcescens 3 0.7202
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7090

Download SDF