Vincamine - Compound Card

Vincamine

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Vincamine

Structure
Zoomed Structure
  • Family: Plantae - Apocynaceae
  • Kingdom: Plantae
  • Class: Alkaloid
    • Subclass: Indole Alkaloid
Canonical Smiles COC(=O)[C@@]1(O)C[C@]2(CC)CCCN3[C@@H]2c2n1c1ccccc1c2CC3
InChI InChI=1S/C21H26N2O3/c1-3-20-10-6-11-22-12-9-15-14-7-4-5-8-16(14)23(17(15)18(20)22)21(25,13-20)19(24)26-2/h4-5,7-8,18,25H,3,6,9-13H2,1-2H3/t18-,20+,21+/m1/s1
InChIKey RXPRRQLKFXBCSJ-GIVPXCGWSA-N
Formula C21H26N2O3
HBA 5
HBD 1
MW 354.45
Rotatable Bonds 2
TPSA 54.7
LogP 2.95
Number Rings 5
Number Aromatic Rings 2
Heavy Atom Count 26
Formal Charge 0
Fraction CSP3 0.57
Exact Mass 354.19
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Catharanthus roseus Apocynaceae Plantae 4058

Showing of synonyms

  • Hanafy M, Matter M, et al. (2016). Production of indole alkaloids in hairy root cultures of Catharanthus roseus L. and their antimicrobial activity. South African Journal of Botany, 2016, 105, 9-18. [View]
Pubchem: 15376
Kegg Ligand: C09251
Chebi: 9985
Nmrshiftdb2: 60027672
Metabolights: MTBLC9985
Drugbank: DB13374
CPRiL: 31443
Structure

SMILES: c1cccc2n(c3c4c12)CCC5C3N(CC4)CCC5

Level: 0

Mol. Weight: 354.45 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.91
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.790
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
-2.29

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
0.940
Plasma Protein Binding
57.25
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Substrate
CYP 2D6 Inhibitor
Inhibitor
CYP 2D6 Substrate
Substrate
CYP 3A4 Inhibitor
Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
7.890
Organic Cation Transporter 2
Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
0.290
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.160
Liver Injury II
Toxic
hERG Blockers
Toxic
Daphnia Maga
5.510
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-6.560
Rat (Acute)
2.630
Rat (Chronic Oral)
1.730
Fathead Minnow
3.960
Respiratory Disease
Toxic
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
428.560
Hydration Free Energy
-5.560
Log(D) at pH=7.4
2.670
Log(P)
2.82
Log S
-2.79
Log(Vapor Pressure)
-8.52
Melting Point
220.75
pKa Acid
8.16
pKa Basic
6.9
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Gag-Pol polyprotein P03369 POL_HV1A2 Human immunodeficiency virus type 1 group M subtype B 3 0.8731
Serpin domain-containing protein H0ZQY2 H0ZQY2_TAEGU Taeniopygia guttata 3 0.8095
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7987
Gag-Pol polyprotein P04585 POL_HV1H2 Human immunodeficiency virus type 1 group M subtype B 3 0.7915
Coagulation factor X P00742 FA10_HUMAN Homo sapiens 3 0.7913
Serine/threonine-protein kinase Chk2 O96017 CHK2_HUMAN Homo sapiens 3 0.7844
Beta-galactosidase P00722 BGAL_ECOLI Escherichia coli 3 0.7469
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7350
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7327
Gag-Pol polyprotein P05896 POL_SIVM1 Simian immunodeficiency virus 3 0.7286
Glutamate receptor 2 P19491 GRIA2_RAT Rattus norvegicus 3 0.7133
Glycogen phosphorylase, muscle form P00489 PYGM_RABIT Oryctolagus cuniculus 3 0.7088
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 2 0.7024
Ribonuclease 4 P15468 RNAS4_PIG Sus scrofa 2 0.7005

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