Camptothecin - Compound Card

Camptothecin

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Camptothecin

Structure
Zoomed Structure
  • Family: Plantae - Apocynaceae
  • Kingdom: Plantae
  • Class: Alkaloid
Canonical Smiles CC[C@@]1(O)C(=O)OCc2c1cc1c3nc4ccccc4cc3Cn1c2=O
InChI InChI=1S/C20H16N2O4/c1-2-20(25)14-8-16-17-12(7-11-5-3-4-6-15(11)21-17)9-22(16)18(23)13(14)10-26-19(20)24/h3-8,25H,2,9-10H2,1H3/t20-/m0/s1
InChIKey VSJKWCGYPAHWDS-FQEVSTJZSA-N
Formula C20H16N2O4
HBA 6
HBD 1
MW 348.36
Rotatable Bonds 1
TPSA 81.42
LogP 2.08
Number Rings 5
Number Aromatic Rings 3
Heavy Atom Count 26
Formal Charge 0
Fraction CSP3 0.25
Exact Mass 348.11
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Pachypodium lamerei Apocynaceae Plantae 69385

Showing of synonyms

  • Mina S.A, Mohamed S.A, et al. (2020). LC-ESI-MS/MS profiling of alkaloids and antiproliferative activity of Pachypoduim lamerei drake leaves. Natural product research, 2020, 34(9), 1292-1296. [View] [PubMed]
Pubchem: 24360
Kegg Ligand: C01897
Chebi: 27656
Nmrshiftdb2: 60020213
Metabolights: MTBLC27656
Chembl: CHEMBL65
Drugbank: DB04690
Pdb Ligand: EHD
Bindingdb: 50008923
CPRiL: 310
Structure

SMILES: c1cccc(n2)c1cc(c23)Cn4c3cc5c(c4=O)COC(=O)C5

Level: 0

Mol. Weight: 348.36 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.68
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.79
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-1.82

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
1.14
Plasma Protein Binding
64.87
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
3.15
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Safe
Bioconcentration Factor
0.41
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.4
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
4.59
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-6.9
Rat (Acute)
3.02
Rat (Chronic Oral)
1.3
Fathead Minnow
5.0
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Toxic

General Properties

Boiling Point
480.12
Hydration Free Energy
-7.14
Log(D) at pH=7.4
1.78
Log(P)
1.79
Log S
-3.86
Log(Vapor Pressure)
-9.9
Melting Point
294.42
pKa Acid
8.65
pKa Basic
4.37
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.8965
Multidrug-efflux transporter 1 regulator P39075 BMRR_BACSU Bacillus subtilis 3 0.8849
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.8794
Phospholipase A2, major isoenzyme P00592 PA21B_PIG Sus scrofa 3 0.8738
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.8613
Phosphodiesterase Q53I60 Q53I60_TRYCR Trypanosoma cruzi 4 0.8605
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 3 0.8529
Carbonic anhydrase 12 O43570 CAH12_HUMAN Homo sapiens 3 0.8523
Cell division cycle 7-related protein kinase O00311 CDC7_HUMAN Homo sapiens 4 0.8483
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.8413
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 4 0.8274
Flavin-dependent monooxygenase Q93L51 TETX_BACT4 Bacteroides thetaiotaomicron 3 0.8246
HTH-type transcriptional regulator TtgR Q9AIU0 TTGR_PSEPT Pseudomonas putida 3 0.8227
Collagenase 3 P45452 MMP13_HUMAN Homo sapiens 4 0.8123
Focal adhesion kinase 1 Q05397 FAK1_HUMAN Homo sapiens 3 0.8091
Glycogen phosphorylase, muscle form P00489 PYGM_RABIT Oryctolagus cuniculus 3 0.8041
Aldo-keto reductase family 1 member B10 O60218 AK1BA_HUMAN Homo sapiens 3 0.7970
Calmodulin-2 P0DP24 CALM2_HUMAN Homo sapiens 3 0.7929
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7851
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 3 0.7828
Retinoic acid receptor RXR-alpha P19793 RXRA_HUMAN Homo sapiens 3 0.7827
Alpha-ketoglutarate-dependent dioxygenase FTO Q9C0B1 FTO_HUMAN Homo sapiens 3 0.7774
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 3 0.7698
Protein S100-A13 Q99584 S10AD_HUMAN Homo sapiens 3 0.7619
Genome polyprotein P26663 POLG_HCVBK Hepatitis C virus genotype 1b 3 0.7618
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 4 0.7593
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9Y233 PDE10_HUMAN Homo sapiens 3 0.7505
Riboflavin biosynthesis protein Q9WZW1 Q9WZW1_THEMA Thermotoga maritima 3 0.7473
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 2 0.7465
Matrix metalloproteinase-9 P14780 MMP9_HUMAN Homo sapiens 3 0.7459
Enoyl-[acyl-carrier-protein] reductase [NADH] P9WGR1 INHA_MYCTU Mycobacterium tuberculosis 3 0.7432
Gag-Pol polyprotein P04585 POL_HV1H2 Human immunodeficiency virus type 1 group M subtype B 3 0.7426
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.7406
Genome polyprotein O92972 POLG_HCVJ4 Hepatitis C virus genotype 1b 3 0.7376
Streptavidin P22629 SAV_STRAV Streptomyces avidinii 3 0.7370
Sulfotransferase 2A1 Q06520 ST2A1_HUMAN Homo sapiens 3 0.7368
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7354
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.7333
Aldo-keto reductase family 1 member C3 P42330 AK1C3_HUMAN Homo sapiens 3 0.7329
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 4 0.7307
Collagenase 3 P45452 MMP13_HUMAN Homo sapiens 4 0.7301
Estrogen receptor P03372 ESR1_HUMAN Homo sapiens 3 0.7289
Mitogen-activated protein kinase 14 Q16539 MK14_HUMAN Homo sapiens 4 0.7268
Albumin P02768 ALBU_HUMAN Homo sapiens 3 0.7265
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.7253
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.7154
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7152
Metallo-beta-lactamase type 2 P25910 BLAB_BACFG Bacteroides fragilis 3 0.7144
Prostaglandin E synthase 2 Q9N0A4 PGES2_MACFA Macaca fascicularis 3 0.7131
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 4 0.7117
Genome polyprotein O92972 POLG_HCVJ4 Hepatitis C virus genotype 1b 3 0.7112
Serine/threonine-protein kinase Chk2 O96017 CHK2_HUMAN Homo sapiens 3 0.7106
Gag-Pol polyprotein P03367 POL_HV1BR Human immunodeficiency virus type 1 group M subtype B 3 0.7102
Bromodomain-containing protein 4 O60885 BRD4_HUMAN Homo sapiens 3 0.7091
Peroxisome proliferator-activated receptor gamma P37231 PPARG_HUMAN Homo sapiens 3 0.7058
Apoptosis regulator Bcl-2 P10415 BCL2_HUMAN Homo sapiens 3 0.7048
Genome polyprotein O92972 POLG_HCVJ4 Hepatitis C virus genotype 1b 3 0.7019
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7012
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 3 0.7011
Fibroblast growth factor receptor 1 P11362 FGFR1_HUMAN Homo sapiens 3 0.7004

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