Trimethylpyrazine - Compound Card

Trimethylpyrazine

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Trimethylpyrazine

Structure
Zoomed Structure
  • Family: Plantae - Brassicaceae
  • Kingdom: Plantae
  • Class: Pyrazine
Canonical Smiles Cc1cnc(c(n1)C)C
InChI InChI=1S/C7H10N2/c1-5-4-8-6(2)7(3)9-5/h4H,1-3H3
InChIKey IAEGWXHKWJGQAZ-UHFFFAOYSA-N
Formula C7H10N2
HBA 2
HBD 0
MW 122.17
Rotatable Bonds 0
TPSA 25.78
LogP 1.4
Number Rings 1
Number Aromatic Rings 1
Heavy Atom Count 9
Formal Charge 0
Fraction CSP3 0.43
Exact Mass 122.08
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Brassica oleracea Brassicaceae Plantae 3712

Showing of synonyms

  • Ben Sassi A, Ascrizzi R, et al. (2022). Volatiles, phenolic compounds, antioxidant and antibacterial properties of kohlrabi leaves. Natural product research, 2022, 36(12), 3143-3148. [View] [PubMed]
CPRiL: 106839
Structure

SMILES: c1cnccn1

Level: 0

Mol. Weight: 122.17 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.03
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-3.45
Human Oral Bioavailability 50%
Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-3.37

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
0.42
Plasma Protein Binding
34.5
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
9.4
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Safe
Bioconcentration Factor
0.76
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Safe
Liver Injury I (DILI)
Safe
Eye Corrosion
Toxic
Eye Irritation
Toxic
Maximum Tolerated Dose
0.92
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
3.02
Micronucleos
Safe
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
2.47
Rat (Acute)
2.08
Rat (Chronic Oral)
1.65
Fathead Minnow
3.06
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
168.22
Hydration Free Energy
-5.3
Log(D) at pH=7.4
1.11
Log(P)
0.85
Log S
0.44
Log(Vapor Pressure)
-0.4
Melting Point
31.17
pKa Acid
12.4
pKa Basic
2.75
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Cyclin-dependent kinase 2 P24941 CDK2_HUMAN Homo sapiens 3 0.9619
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9Y233 PDE10_HUMAN Homo sapiens 3 0.9582
Caspase-7 P55210 CASP7_HUMAN Homo sapiens 3 0.9422
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 3 0.9390
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 3 0.9357
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 3 0.9340
Casein kinase II subunit alpha P28523 CSK2A_MAIZE Zea mays 3 0.9211
Odorant-binding protein P81245 OBP_PIG Sus scrofa 3 0.9019
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.8815
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 P04191 AT2A1_RABIT Oryctolagus cuniculus 3 0.8663
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.8663
Mycinamicin III 3''-O-methyltransferase Q49492 MYCF_MICGR Micromonospora griseorubida 2 0.8513
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 3 0.8458
Soluble acetylcholine receptor Q8WSF8 Q8WSF8_APLCA Aplysia californica 3 0.8270
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.8244
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.8222
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.8161
Mycinamicin III 3''-O-methyltransferase Q49492 MYCF_MICGR Micromonospora griseorubida 2 0.8067
Enoyl-[acyl-carrier-protein] reductase [NADH] P9WGR1 INHA_MYCTU Mycobacterium tuberculosis 3 0.8026
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.8005
Aldo-keto reductase family 1 member B10 O60218 AK1BA_HUMAN Homo sapiens 3 0.7981
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.7977
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.7902
3-ketosteroid dehydrogenase Q9RA02 Q9RA02_RHOER Rhodococcus erythropolis 2 0.7888
Acetylcholinesterase P21836 ACES_MOUSE Mus musculus 2 0.7876
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7875
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.7828
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.7791
Albumin P02769 ALBU_BOVIN Bos taurus 3 0.7718
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7646
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 2 0.7627
2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase Q84HC8 NCSB1_STRCZ Streptomyces carzinostaticus 2 0.7618
Sulfotransferase 2A1 Q06520 ST2A1_HUMAN Homo sapiens 2 0.7617
UDP-glycosyltransferase 72B1 Q9M156 U72B1_ARATH Arabidopsis thaliana 3 0.7616
Soluble cytochrome b562 P0ABE7 C562_ECOLX Escherichia coli 2 0.7607
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7590
Dicamba O-demethylase, oxygenase component Q5S3I3 DDMC_STEMA Stenotrophomonas maltophilia 3 0.7583
Serine/threonine-protein kinase Chk2 O96017 CHK2_HUMAN Homo sapiens 2 0.7525
Thymidine kinase P0DTH5 KITH_HHV11 Human herpesvirus 1 2 0.7524
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7506
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7454
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.7449
Fatty acid-binding protein, liver P80226 FABPL_CHICK Gallus gallus 2 0.7434
Glutathione S-transferase A1 P08263 GSTA1_HUMAN Homo sapiens 2 0.7427
Aldo-keto reductase family 1 member B1 P80276 ALDR_PIG Sus scrofa 3 0.7401
Peptidyl-prolyl cis-trans isomerase FKBP1A P62942 FKB1A_HUMAN Homo sapiens 3 0.7371
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 P04191 AT2A1_RABIT Oryctolagus cuniculus 3 0.7366
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 2 0.7360
Peroxisome proliferator-activated receptor gamma P37231 PPARG_HUMAN Homo sapiens 2 0.7360
Steroid 21-hydroxylase P08686 CP21A_HUMAN Homo sapiens 2 0.7337
3-alpha-hydroxysteroid dehydrogenase P23457 DIDH_RAT Rattus norvegicus 2 0.7317
Sulfotransferase 2A1 Q06520 ST2A1_HUMAN Homo sapiens 2 0.7315
Succinate dehydrogenase flavoprotein subunit P0AC41 SDHA_ECOLI Escherichia coli 2 0.7305
Thymidine kinase P0DTH5 KITH_HHV11 Human herpesvirus 1 2 0.7286
17-beta-hydroxysteroid dehydrogenase type 1 P14061 DHB1_HUMAN Homo sapiens 2 0.7266
Nuclear receptor subfamily 1 group I member 3 O35627 NR1I3_MOUSE Mus musculus 2 0.7254
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7253
Beta-lactoglobulin P02754 LACB_BOVIN Bos taurus 2 0.7248
Prostaglandin reductase 2 Q8N8N7 PTGR2_HUMAN Homo sapiens 2 0.7244
Rhodopsin P02699 OPSD_BOVIN Bos taurus 2 0.7244
Bromodomain-containing protein 2 P25440 BRD2_HUMAN Homo sapiens 2 0.7243
Androgen receptor P10275 ANDR_HUMAN Homo sapiens 2 0.7233
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7231
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase F6MZ55 F6MZ55_9FIRM Sporomusa ovata 2 0.7222
NPC intracellular cholesterol transporter 1 O15118 NPC1_HUMAN Homo sapiens 2 0.7210
Retinol-binding protein 4 P18902 RET4_BOVIN Bos taurus 2 0.7206
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Q05603 COBT_SALTY Salmonella typhimurium 2 0.7196
Gag-Pol polyprotein P03366 POL_HV1B1 Human immunodeficiency virus type 1 group M subtype B 3 0.7195
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7179
AGAP003309-PA A0A1U7F4W2 A0A1U7F4W2_ANOGA Anopheles gambiae 2 0.7174
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7157
Acetylcholinesterase P21836 ACES_MOUSE Mus musculus 2 0.7156
cAMP-dependent protein kinase catalytic subunit alpha P17612 KAPCA_HUMAN Homo sapiens 2 0.7148
Jasmonoyl--L-amino acid synthetase JAR1 Q9SKE2 JAR1_ARATH Arabidopsis thaliana 3 0.7145
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7145
Thiamine-phosphate synthase P39594 THIE_BACSU Bacillus subtilis 2 0.7107
Achbp I6L8L2 I6L8L2_CAPTE Capitella teleta 2 0.7095
Kynurenine 3-monooxygenase P38169 KMO_YEAST Saccharomyces cerevisiae 2 0.7092
Progesterone receptor P06401 PRGR_HUMAN Homo sapiens 2 0.7075
Bifunctional dihydrofolate reductase-thymidylate synthase P13922 DRTS_PLAFK Plasmodium falciparum 2 0.7074
Androgen receptor P10275 ANDR_HUMAN Homo sapiens 2 0.7071
Alcohol dehydrogenase E chain P00327 ADH1E_HORSE Equus caballus 3 0.7070
Ribosyldihydronicotinamide dehydrogenase [quinone] P16083 NQO2_HUMAN Homo sapiens 2 0.7070
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase F6MZ55 F6MZ55_9FIRM Sporomusa ovata 2 0.7062
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7042
Dual specificity mitogen-activated protein kinase kinase 1 Q02750 MP2K1_HUMAN Homo sapiens 2 0.7011
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7010
Aromatase P11511 CP19A_HUMAN Homo sapiens 2 0.7005
Albumin P02768 ALBU_HUMAN Homo sapiens 2 0.7001

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