Pheophorbide b - Compound Card

Pheophorbide b

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Pheophorbide b

Structure
Zoomed Structure
  • Family: Plantae - Convolvulaceae
  • Kingdom: Plantae
  • Class: Chlorophyll
Canonical Smiles C=CC1=C(C)C2=N/C/1=C\C1=NC(=C(/C/1=C/O)CC)/C=C/1\N=C3/C(=C/4\N/C(=C\2)/[C@@H](C)[C@@H]4CCC(=O)O)/[C@@H](C(=O)OC)C(=O)C3=C1C
InChI InChI=1S/C35H34N4O6/c1-7-18-15(3)22-11-23-16(4)20(9-10-28(41)42)32(38-23)30-31(35(44)45-6)34(43)29-17(5)24(39-33(29)30)12-26-19(8-2)21(14-40)27(37-26)13-25(18)36-22/h7,11-14,16,20,31,38,40H,1,8-10H2,2-6H3,(H,41,42)/b21-14-,23-11-,24-12-,25-13-,32-30-/t16-,20-,31+/m0/s1
InChIKey KZTYPOGXRFTJBN-OPGKIYJYSA-N
Formula C35H34N4O6
HBA 9
HBD 3
MW 606.68
Rotatable Bonds 6
TPSA 150.01
LogP 5.29
Number Rings 6
Number Aromatic Rings 0
Heavy Atom Count 45
Formal Charge 0
Fraction CSP3 0.31
Exact Mass 606.25
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Convolvulus althaeoides Convolvulaceae Plantae 267570

Showing of synonyms

  • Hrichi S, Chaabane-Banaoues R, et al. (2020). Effect of seasonal variation on the chemical composition and antioxidant and antifungal activities of Convolvulus althaeoides L. leaf extract. Arabian Journal of Chemistry, 2020, 13(6), 5651-5668. [View]
CPRiL: 286853
Structure

SMILES: c12c3c(C(=O)C2)cc(n3)cc4cc(=C)c(n4)cc5ccc(n5)cc6[nH]c1CC6

Level: 0

Mol. Weight: 606.68 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.76
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-5.01
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
34.87

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
1.44
Plasma Protein Binding
100.39
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
4.55
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Toxic
Avian
Safe
Bee
Safe
Bioconcentration Factor
-3.19
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.15
Liver Injury II
Toxic
hERG Blockers
Toxic
Daphnia Maga
3.9
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-70049.21
Rat (Acute)
3.23
Rat (Chronic Oral)
2.02
Fathead Minnow
104.47
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Toxic
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Safe

General Properties

Boiling Point
1723.29
Hydration Free Energy
-2.92
Log(D) at pH=7.4
2.59
Log(P)
2.77
Log S
-5.33
Log(Vapor Pressure)
-131.69
Melting Point
257.64
pKa Acid
3.02
pKa Basic
3.05
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.9284
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.9199
Avidin P02701 AVID_CHICK Gallus gallus 3 0.7742
Pancreatic alpha-amylase P04746 AMYP_HUMAN Homo sapiens 2 0.7646
Norsolorinic acid synthase Q12053 AFLC_ASPPU Aspergillus parasiticus 3 0.7535
Capsid protein Q9WBP8 Q9WBP8_9VIRU Adeno-associated virus - 1 2 0.7423
Serine/threonine-protein kinase SKY1 Q03656 SKY1_YEAST Saccharomyces cerevisiae 2 0.7378
Thiamine-phosphate synthase P39594 THIE_BACSU Bacillus subtilis 3 0.7219
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7105
Metallo-beta-lactamase type 2 P26918 BLAB_AERHY Aeromonas hydrophila 2 0.7052

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