Cucumol B - Compound Card

Cucumol B

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Cucumol B

Structure
Zoomed Structure
  • Family: Plantae - Cucurbitaceae
  • Kingdom: Plantae
  • Class: Terpenoid
    • Subclass: Triterpene
Canonical Smiles C1[C@@H](C(C2[C@]([C@H]1O)(C1=CC=C3[C@]([C@@]1(CC2)C)(CCC1([C@H]3CC(CC1)(C)C)COC(=O)c1ccccc1)C)C)(C)C)OC(=O)CCCCCCCCCCCCCCC
InChI InChI=1S/C53H82O5/c1-9-10-11-12-13-14-15-16-17-18-19-20-24-27-46(55)58-45-36-44(54)52(8)42(49(45,4)5)30-31-51(7)43(52)29-28-40-41-37-48(2,3)32-34-53(41,35-33-50(40,51)6)38-57-47(56)39-25-22-21-23-26-39/h21-23,25-26,28-29,41-42,44-45,54H,9-20,24,27,30-38H2,1-8H3/t41-,42?,44-,45-,50+,51+,52-,53?/m0/s1
InChIKey QSUHWZWZMVLHHN-INYVKHKZSA-N
Formula C53H82O5
HBA 5
HBD 1
MW 799.23
Rotatable Bonds 18
TPSA 72.83
LogP 13.93
Number Rings 6
Number Aromatic Rings 1
Heavy Atom Count 58
Formal Charge 0
Fraction CSP3 0.77
Exact Mass 798.62
Number of Lipinski Rule Violations 2
# Species Family Kingdom NCBI Taxonomy ID
1 Cucumis melo Cucurbitaceae Plantae 3656

Showing of synonyms

  • Ibrahim S.R.M, Khedr A.I.M, et al. (2019). Cucumol B, a new triterpene benzoate from Cucumis melo seeds with cytotoxic effect toward ovarian and human breast adenocarcinoma. Journal of Asian natural products research, 2019, 21(11), 1112-1118. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: c1ccccc1C(=O)OCC23C(CCCC3)C=4C(CC2)C5C(=CC4)C6C(CC5)CCCC6

Level: 1

Mol. Weight: 799.23 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(=CC3)C5C(CC4)CCCC5

Level: 0

Mol. Weight: 799.23 g/mol

Structure

SMILES: c1ccccc1

Level: 0

Mol. Weight: 799.23 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.63
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
72.96
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
10184.18

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
2.36
Plasma Protein Binding
98.29
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
5.41
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Toxic
Bioconcentration Factor
-240.76
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.38
Liver Injury II
Safe
hERG Blockers
Toxic
Daphnia Maga
3.7
Micronucleos
Safe
NR-AhR
Safe
NR-AR
Toxic
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Toxic
T. Pyriformis
-18489664.03
Rat (Acute)
2.7
Rat (Chronic Oral)
2.83
Fathead Minnow
23346.35
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
2077391.02
Hydration Free Energy
-2.92
Log(D) at pH=7.4
8.97
Log(P)
15.13
Log S
-7.45
Log(Vapor Pressure)
-68323.4
Melting Point
145.67
pKa Acid
-435.7
pKa Basic
6.79
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
ADP-ribosylation factor 1 P84077 ARF1_HUMAN Homo sapiens 2 0.7758
Peptidyl-prolyl cis-trans isomerase FKBP1A P62942 FKB1A_HUMAN Homo sapiens 2 0.7737
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7605
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7441
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase Q9TQS6 DHDH_MACFA Macaca fascicularis 2 0.7208
Tetracycline repressor protein class H P51561 TETR8_PASMD Pasteurella multocida 2 0.7205
NAD-capped RNA hydrolase NudC P32664 NUDC_ECOLI Escherichia coli 2 0.7192
Flavoredoxin Q72HI0 Q72HI0_THET2 Thermus thermophilus 2 0.7139
Chitinase Q54276 Q54276_SERMA Serratia marcescens 2 0.7058
Carbonic anhydrase 1 P00915 CAH1_HUMAN Homo sapiens 2 0.7057
Lactoperoxidase P80025 PERL_BOVIN Bos taurus 2 0.7007
Stromelysin-1 P08254 MMP3_HUMAN Homo sapiens 2 0.7005
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.7002

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