Pendulaoside B - Compound Card

Pendulaoside B

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Pendulaoside B

Structure
Zoomed Structure
  • Family: Plantae - Sapindaceae
  • Kingdom: Plantae
  • Class: Saponin
    • Subclass: Triterpenoid Saponin
Canonical Smiles CCC(C(=O)O[C@H]1CC(C)(C)C[C@@]2([C@@]1(CO)[C@H](O)C[C@@]1(C2=CCC2[C@@]1(C)CCC1[C@]2(C)CC[C@@H]([C@]1(C)CO)OC1OC(C(=O)O)C(C(C1OC1OC(CO)C(C(C1O)O)O)OC1OC(C(C1O)O)CO)O)C)C)C
InChI InChI=1S/C53H86O21/c1-10-24(2)43(67)70-32-18-47(3,4)21-52(9)29-12-11-28-48(5)15-14-31(49(6,22-56)27(48)13-16-50(28,7)51(29,8)17-30(58)53(32,52)23-57)71-46-41(74-45-37(63)35(61)33(59)25(19-54)68-45)39(38(64)40(73-46)42(65)66)72-44-36(62)34(60)26(20-55)69-44/h12,24-28,30-41,44-46,54-64H,10-11,13-23H2,1-9H3,(H,65,66)/t24?,25?,26?,27?,28?,30-,31+,32+,33?,34?,35?,36?,37?,38?,39?,40?,41?,44?,45?,46?,48+,49-,50-,51-,52+,53+/m1/s1
InChIKey GGXIRTFEPAIOKO-XTSVCANUSA-N
Formula C53H86O21
HBA 20
HBD 12
MW 1059.25
Rotatable Bonds 14
TPSA 341.51
LogP 0.25
Number Rings 8
Number Aromatic Rings 0
Heavy Atom Count 74
Formal Charge 0
Fraction CSP3 0.92
Exact Mass 1058.57
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Harpullia pendula Sapindaceae Plantae 884417

Showing of synonyms

  • Ghaly N, Nabil M, et al. (2017). Pendulaosides A and B. Two acylated triterpenoid saponins from Harpullia pendula seed extract. Phytochemistry Letters, 2017, 21, 278-282. [View]

No compound-protein relationship available.

Structure

SMILES: O1CCCCC1OC2C(OC3CCCO3)CCOC2OC(CC4)CC(CC5)C4C(CC6)C5C(C=67)CCC8C7CCCC8

Level: 3

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(CC3)C5C(CC4)CC(CC5)OC(OCCC6)C6OC7CCCCO7

Level: 2

Mol. Weight: 1059.25 g/mol

Structure

SMILES: O1CCCC1OC2CC(OCC2)OC(CC3)CC(CC4)C3C(CC5)C4C(C=56)CCC7C6CCCC7

Level: 2

Mol. Weight: 1059.25 g/mol

Structure

SMILES: O1CCCC1OC2C(COCC2)OC3CCCCO3

Level: 2

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(CC3)C5C(CC4)CC(CC5)OC6CCCCO6

Level: 1

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1059.25 g/mol

Structure

SMILES: O1CCCC1OC2CCOCC2

Level: 1

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1CCCC2C1CCC(C2=3)C4C(CC3)C5C(CC4)CCCC5

Level: 0

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1059.25 g/mol

Structure

SMILES: C1CCOC1

Level: 0

Mol. Weight: 1059.25 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-6.18
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
104718.09
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
13686342.74

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.87
Plasma Protein Binding
43.6
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
1.62
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-318306.99
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-0.42
Liver Injury II
Safe
hERG Blockers
Safe
Daphnia Maga
4.05
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-24840050255.31
Rat (Acute)
3.37
Rat (Chronic Oral)
52.96
Fathead Minnow
31355266.78
Respiratory Disease
Safe
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
2793812024.2
Hydration Free Energy
-2.92
Log(D) at pH=7.4
-1542.26
Log(P)
1.67
Log S
-2.08
Log(Vapor Pressure)
-91998688.07
Melting Point
209.87
pKa Acid
-670266.46
pKa Basic
-5371.26
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7382

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