Daucovirgolide H - Compound Card

Daucovirgolide H

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Daucovirgolide H

Structure
Zoomed Structure
  • Family: Plantae - Umbelliferae
  • Kingdom: Plantae
  • Class: Terpenoid
    • Subclass: Sesquiterpenoid
Canonical Smiles C/C=C(\C(=O)O[C@]1(C)C(=O)O[C@@H]2[C@@H]1[C@H](/C=C(\C)/CCC(=O)C(=C)C2)OC(=O)[C@@]1(C)O[C@H]1C)/C
InChI InChI=1S/C25H32O8/c1-8-14(3)21(27)33-25(7)20-18(30-22(28)24(6)16(5)32-24)11-13(2)9-10-17(26)15(4)12-19(20)31-23(25)29/h8,11,16,18-20H,4,9-10,12H2,1-3,5-7H3/b13-11+,14-8-/t16-,18-,19-,20-,24-,25-/m0/s1
InChIKey REEISASKQFWFLK-SQXTUQGZSA-N
Formula C25H32O8
HBA 8
HBD 0
MW 460.52
Rotatable Bonds 4
TPSA 108.5
LogP 3.14
Number Rings 3
Number Aromatic Rings 0
Heavy Atom Count 33
Formal Charge 0
Fraction CSP3 0.6
Exact Mass 460.21
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Daucus virgatus Umbelliferae Plantae 1869349

Showing of synonyms

  • Sirignano C, Snene A, et al. (2017). Angeloylated Germacranolides from Daucus virgatus and Their Plasmodium Transmission Blocking Activity. J Nat Prod,2017,80(10),2787-2794. [View] [PubMed]

No compound-protein relationship available.

Structure

SMILES: O1CC1C(=O)OC2C=CCCC(=O)C(=C)CC(C23)OC(=O)C3

Level: 1

Mol. Weight: 460.52 g/mol

Structure

SMILES: C1C(=O)OC(C12)CC(=C)C(=O)CCC=CC2

Level: 0

Mol. Weight: 460.52 g/mol

Structure

SMILES: C1CO1

Level: 0

Mol. Weight: 460.52 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-5.0
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.65
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-3.36

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.46
Plasma Protein Binding
53.32
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
13.04
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Toxic
Avian
Safe
Bee
Toxic
Bioconcentration Factor
0.67
Biodegradation
Safe
Carcinogenesis
Toxic
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.72
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
7.26
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Toxic
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-81.81
Rat (Acute)
3.96
Rat (Chronic Oral)
2.01
Fathead Minnow
4.54
Respiratory Disease
Safe
Skin Sensitisation
Toxic
SR-ARE
Toxic
SR-ATAD5
Safe
SR-HSE
Toxic
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
405.94
Hydration Free Energy
-2.66
Log(D) at pH=7.4
2.83
Log(P)
3.12
Log S
-4.15
Log(Vapor Pressure)
-7.3
Melting Point
90.21
pKa Acid
6.82
pKa Basic
1.81
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
3-alpha-hydroxysteroid dehydrogenase P23457 DIDH_RAT Rattus norvegicus 3 0.8976
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial Q0QF01 SDHA_PIG Sus scrofa 3 0.8687
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 3 0.8242
Retinoic acid receptor RXR-alpha P19793 RXRA_HUMAN Homo sapiens 3 0.8139
Probable NDP-rhamnosyltransferase Q9ALM8 Q9ALM8_SACSN Saccharopolyspora spinosa 3 0.8019
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7878
Integrin alpha-L P20701 ITAL_HUMAN Homo sapiens 3 0.7773
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 3 0.7718
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 2 0.7629
Type IV / VI secretion system DotU domain-containing protein Q9KN50 Q9KN50_VIBCH Vibrio cholerae serotype O1 2 0.7449
Acetylcholinesterase P21836 ACES_MOUSE Mus musculus 2 0.7270
Aldo-keto reductase family 1 member C2 P52895 AK1C2_HUMAN Homo sapiens 2 0.7269
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 3 0.7225
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7161
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 2 0.7053

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