(3beta)-3-{[6-deoxy-alpha-L-mannopyranosyl-(1→2)-alpha-L-arabinopyranosyl-(1→2)-beta-D-glucopyranurosonyl]oxy}urs-20-en-28-oic acid 28-(2-O-sulfo-beta-D-glucopyranosyl) ester - Compound Card

(3beta)-3-{[6-deoxy-alpha-L-mannopyranosyl-(1→2)-alpha-L-arabinopyranosyl-(1→2)-beta-D-glucopyranurosonyl]oxy}urs-20-en-28-oic acid 28-(2-O-sulfo-beta-D-glucopyranosyl) ester

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(3beta)-3-{[6-deoxy-alpha-L-mannopyranosyl-(1→2)-alpha-L-arabinopyranosyl-(1→2)-beta-D-glucopyranurosonyl]oxy}urs-20-en-28-oic acid 28-(2-O-sulfo-beta-D-glucopyranosyl) ester

Structure
Zoomed Structure
  • Family: Plantae - Zygophyllaceae
  • Kingdom: Plantae
  • Class: Saponin
    • Subclass: Triterpene Glycoside
Canonical Smiles OC[C@H]1O[C@@H](OC(=O)[C@@]23CC=C([C@@H](C3C3[C@](CC2)(C)[C@]2(C)CCC4[C@](C2CC3)(C)CC[C@@H](C4(C)C)O[C@H]2O[C@@H](C(=O)O)[C@@H]([C@H]([C@@H]2O[C@H]2OC[C@H]([C@H]([C@@H]2O[C@H]2O[C@H](C)[C@H]([C@@H]([C@@H]2O)O)O)O)O)O)O)C)C)[C@@H]([C@H]([C@@H]1O)O)OS(=O)(=O)O
InChI InChI=1S/C53H84O25S/c1-21-11-16-53(48(66)77-47-42(78-79(67,68)69)35(60)33(58)26(19-54)72-47)18-17-51(7)24(30(53)22(21)2)9-10-28-50(6)14-13-29(49(4,5)27(50)12-15-52(28,51)8)73-46-41(37(62)36(61)39(74-46)43(64)65)76-45-40(32(57)25(55)20-70-45)75-44-38(63)34(59)31(56)23(3)71-44/h11,22-42,44-47,54-63H,9-10,12-20H2,1-8H3,(H,64,65)(H,67,68,69)/t22-,23+,24?,25+,26+,27?,28?,29-,30?,31+,32+,33+,34-,35-,36+,37+,38-,39+,40-,41-,42+,44+,45+,46-,47-,50-,51+,52+,53-/m0/s1
InChIKey OUIZLVDOAJSZKN-RBGYGPSXSA-N
Formula C53H84O25S
HBA 23
HBD 12
MW 1153.3
Rotatable Bonds 12
TPSA 394.11
LogP -0.59
Number Rings 9
Number Aromatic Rings 0
Heavy Atom Count 79
Formal Charge 0
Fraction CSP3 0.92
Exact Mass 1152.5
Number of Lipinski Rule Violations 3
# Species Family Kingdom NCBI Taxonomy ID
1 Zygophyllum geslini Zygophyllaceae Plantae 66651

Showing of synonyms

  • Smati D, Mitaine‐Offer A, et al. (2007). Ursane-Type Triterpene Saponins from Zygophyllum geslini. Helvetica Chimica Acta, 2007,90(4),712-719. [View]

No compound-protein relationship available.

Structure

SMILES: O1CCCCC1OC(=O)C23C(CC=CC2)C4C(CC3)C5C(CC4)C6C(CC5)CC(CC6)OC(OCCC7)C7OC(OCCC8)C8OC9CCCCO9

Level: 4

Mol. Weight: 1153.3 g/mol

Structure

SMILES: O1CCCCC1OC(=O)C23C(CC=CC2)C4C(CC3)C5C(CC4)C6C(CC5)CC(CC6)OC(OCCC7)C7OC8CCCCO8

Level: 3

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1C=CCC(CC2)C1C3CCC(C4C23)C5C(CC4)CC(CC5)OC(OCCC6)C6OC(OCCC7)C7OC8CCCCO8

Level: 3

Mol. Weight: 1153.3 g/mol

Structure

SMILES: O1CCCCC1OC(=O)C23C(CC=CC2)C4C(CC3)C5C(CC4)C6C(CC5)CC(CC6)OC7CCCCO7

Level: 2

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1C=CCC(CC2)C1C3CCC(C4C23)C5C(CC4)CC(CC5)OC(OCCC6)C6OC7CCCCO7

Level: 2

Mol. Weight: 1153.3 g/mol

Structure

SMILES: O1CCCCC1OC2C(OCCC2)OC3CCCOC3

Level: 2

Mol. Weight: 1153.3 g/mol

Structure

SMILES: O1CCCCC1OC(=O)C23C(CC=CC2)C4C(CC3)C5C(CC4)C6C(CC5)CCCC6

Level: 1

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1C=CCC(CC2)C1C3CCC(C4C23)C5C(CC4)CC(CC5)OC6CCCCO6

Level: 1

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1OCCCC1OC2CCCCO2

Level: 1

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1C=CCC(CC2)C1C3CCC(C4C23)C5C(CC4)CCCC5

Level: 0

Mol. Weight: 1153.3 g/mol

Structure

SMILES: C1CCOCC1

Level: 0

Mol. Weight: 1153.3 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-6.18
Human Oral Bioavailability 20%
Non-Bioavailable
Human Intestinal Absorption
Non-Absorbed
Madin-Darby Canine Kidney
1251240.540
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
163523497.45

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Non-Penetrable
Fraction Unbound (Human)
0.970
Plasma Protein Binding
84.36
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Non-Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Non-Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Non-Substrate
CYP 2D6 Inhibitor
Non-Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Inhibitor
OATP1B3
Inhibitor

Excretion

Clearance
0.850
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Toxic
Bee
Safe
Bioconcentration Factor
-3803183.280
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
-2.940
Liver Injury II
Toxic
hERG Blockers
Toxic
Daphnia Maga
4.050
Micronucleos
Toxic
NR-AhR
Safe
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-296787305267.880
Rat (Acute)
2.170
Rat (Chronic Oral)
637.670
Fathead Minnow
374631084.620
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
33380337588.260
Hydration Free Energy
-2.920
Log(D) at pH=7.4
-18538.720
Log(P)
-3.07
Log S
-1.87
Log(Vapor Pressure)
-1099197753.96
Melting Point
205.51
pKa Acid
-8009305.22
pKa Basic
-64411.24
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Mexicain P84346 MEX1_JACME Jacaratia mexicana 3 0.7794

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