Dicentrine - Compound Card

Dicentrine

Select a section from the left sidebar

Dicentrine

Structure
Zoomed Structure
  • Family: Plantae - Menispermaceae
  • Kingdom: Plantae
  • Class: Alkaloid
Canonical Smiles COc1cc2c(cc1OC)C[C@H]1c3c2c2OCOc2cc3CCN1C
InChI InChI=1S/C20H21NO4/c1-21-5-4-11-7-17-20(25-10-24-17)19-13-9-16(23-3)15(22-2)8-12(13)6-14(21)18(11)19/h7-9,14H,4-6,10H2,1-3H3/t14-/m0/s1
InChIKey YJWBWQWUHVXPNC-AWEZNQCLSA-N
Formula C20H21NO4
HBA 5
HBD 0
MW 339.39
Rotatable Bonds 2
TPSA 40.16
LogP 3.18
Number Rings 5
Number Aromatic Rings 2
Heavy Atom Count 25
Formal Charge 0
Fraction CSP3 0.4
Exact Mass 339.15
Number of Lipinski Rule Violations 0
# Species Family Kingdom NCBI Taxonomy ID
1 Albertisia delagoensis Menispermaceae Plantae 3021348

Showing of synonyms

  • De Wet H, Van Heerden FR, et al. (2007). Antiplasmodial activity and cytotoxicity of Albertisia delagoensis. Fitoterapia, 2007, 78(6), 420–422. [View]
Pubchem: 101300
Kegg Ligand: C17426
Chebi: 81079
Nmrshiftdb2: 60022991
Metabolights: MTBLC81079
Bindingdb: 50306885
CPRiL: 107348
Structure

SMILES: O1COc(c12)cc3c4c2c5c(cccc5)CC4NCC3

Level: 0

Mol. Weight: 339.39 g/mol

No bioactivities available.

Absorption

Caco-2 (logPapp)
-4.95
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.600
Human Oral Bioavailability 50%
Non-Bioavailable
P-Glycoprotein Inhibitor
Non-Inhibitor
P-Glycoprotein Substrate
Substrate
Skin Permeability
-2.48

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
0.920
Plasma Protein Binding
54.92
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Non-Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Substrate
CYP 2C9 Inhibitor
Non-Inhibitor
CYP 2C9 Substrate
Substrate
CYP 2D6 Inhibitor
Inhibitor
CYP 2D6 Substrate
Substrate
CYP 3A4 Inhibitor
Inhibitor
CYP 3A4 Substrate
Substrate
OATP1B1
Non-Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
11.260
Organic Cation Transporter 2
Non-Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Toxic
Avian
Safe
Bee
Toxic
Bioconcentration Factor
2.720
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Safe
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
1.120
Liver Injury II
Toxic
hERG Blockers
Toxic
Daphnia Maga
8.560
Micronucleos
Toxic
NR-AhR
Toxic
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-6.380
Rat (Acute)
2.660
Rat (Chronic Oral)
1.330
Fathead Minnow
4.820
Respiratory Disease
Toxic
Skin Sensitisation
Toxic
SR-ARE
Safe
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Safe
SR-p53
Safe

General Properties

Boiling Point
406.900
Hydration Free Energy
-7.190
Log(D) at pH=7.4
2.820
Log(P)
2.68
Log S
-3.43
Log(Vapor Pressure)
-7.78
Melting Point
154.4
pKa Acid
11.25
pKa Basic
7.85
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 4 0.9737
Norsolorinic acid synthase Q12053 AFLC_ASPPU Aspergillus parasiticus 3 0.9687
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 3 0.9604
cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Q9Y233 PDE10_HUMAN Homo sapiens 3 0.9420
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.9299
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 4 0.9120
cGMP-specific 3',5'-cyclic phosphodiesterase O76074 PDE5A_HUMAN Homo sapiens 3 0.8924
Aurora kinase A O14965 AURKA_HUMAN Homo sapiens 3 0.8914
Tetracycline repressor protein class H P51561 TETR8_PASMD Pasteurella multocida 3 0.8847
Protein ppBat Q8A8A4 Q8A8A4_BACTN Bacteroides thetaiotaomicron VPI-5482 3 0.8704
Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase Q46381 BPHB_COMTE Comamonas testosteroni 3 0.8674
Proliferating cell nuclear antigen P12004 PCNA_HUMAN Homo sapiens 3 0.8534
ATP-dependent molecular chaperone HSP82 P02829 HSP82_YEAST Saccharomyces cerevisiae 3 0.8443
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.8411
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.8372
Casein kinase II subunit alpha P68400 CSK21_HUMAN Homo sapiens 3 0.8319
Alpha-ketoglutarate-dependent dioxygenase FTO Q9C0B1 FTO_HUMAN Homo sapiens 3 0.8303
Serine/threonine-protein kinase 24 Q9Y6E0 STK24_HUMAN Homo sapiens 3 0.8288
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.8286
Protoporphyrinogen oxidase P50336 PPOX_HUMAN Homo sapiens 3 0.8270
Acetylcholinesterase P04058 ACES_TETCF Tetronarce californica 3 0.8212
Activin receptor type-1 Q04771 ACVR1_HUMAN Homo sapiens 3 0.8210
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform P48736 PK3CG_HUMAN Homo sapiens 3 0.8204
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 3 0.8136
Protoporphyrinogen oxidase P50336 PPOX_HUMAN Homo sapiens 3 0.8112
Mycinamicin III 3''-O-methyltransferase Q49492 MYCF_MICGR Micromonospora griseorubida 2 0.8040
Abscisic acid receptor PYL2 O80992 PYL2_ARATH Arabidopsis thaliana 3 0.8038
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.8027
Bifunctional dihydrofolate reductase-thymidylate synthase O02604 DRTS_PLAVI Plasmodium vivax 3 0.8001
Aldo-keto reductase family 1 member D1 P51857 AK1D1_HUMAN Homo sapiens 3 0.7955
Steroid Delta-isomerase P00947 SDIS_COMTE Comamonas testosteroni 3 0.7927
NADPH dehydrogenase 1 Q02899 OYE1_SACPS Saccharomyces pastorianus 3 0.7897
Genome polyprotein O92972 POLG_HCVJ4 Hepatitis C virus genotype 1b 3 0.7819
Casein kinase II subunit alpha P68400 CSK21_HUMAN Homo sapiens 4 0.7772
NAD(P)H dehydrogenase [quinone] 1 P15559 NQO1_HUMAN Homo sapiens 3 0.7761
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.7756
Bromodomain adjacent to zinc finger domain protein 2B Q9UIF8 BAZ2B_HUMAN Homo sapiens 3 0.7742
Corticosteroid-binding globulin P08185 CBG_HUMAN Homo sapiens 4 0.7721
Glycogen synthase Q9V2J8 Q9V2J8_PYRAB Pyrococcus abyssi 3 0.7714
Flavoredoxin Q72HI0 Q72HI0_THET2 Thermus thermophilus 3 0.7692
Ephrin type-B receptor 4 P54760 EPHB4_HUMAN Homo sapiens 3 0.7625
Nuclear receptor subfamily 4immunitygroup A member 1 P22736 NR4A1_HUMAN Homo sapiens 3 0.7621
Mitogen-activated protein kinase 8 P45983 MK08_HUMAN Homo sapiens 3 0.7608
Phosphatidylinositol 5-phosphate 4-kinase type-2 beta P78356 PI42B_HUMAN Homo sapiens 3 0.7604
Glycogen synthase Q9V2J8 Q9V2J8_PYRAB Pyrococcus abyssi 3 0.7567
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform P48736 PK3CG_HUMAN Homo sapiens 3 0.7567
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7551
Acetylcholine-binding protein P58154 ACHP_LYMST Lymnaea stagnalis 3 0.7504
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 3 0.7463
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7458
Tyrosine-protein kinase JAK1 P23458 JAK1_HUMAN Homo sapiens 4 0.7447
Serine/threonine-protein kinase Chk1 O14757 CHK1_HUMAN Homo sapiens 3 0.7443
Glycogen phosphorylase, muscle form P00489 PYGM_RABIT Oryctolagus cuniculus 3 0.7439
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 2 0.7432
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase O67060 ISPE_AQUAE Aquifex aeolicus 3 0.7432
Tyrosine-protein kinase JAK2 O60674 JAK2_HUMAN Homo sapiens 4 0.7428
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7403
Bifunctional epoxide hydrolase 2 P34913 HYES_HUMAN Homo sapiens 2 0.7376
Fatty acid-binding protein, intestinal P12104 FABPI_HUMAN Homo sapiens 3 0.7366
Dihydroflavonol 4-reductase P51110 DFRA_VITVI Vitis vinifera 3 0.7354
Riboflavin synthase P0AFU8 RISA_ECOLI Escherichia coli 3 0.7318
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 3 0.7309
Glycogen synthase kinase-3 beta P49841 GSK3B_HUMAN Homo sapiens 2 0.7305
Cathepsin S P25774 CATS_HUMAN Homo sapiens 3 0.7255
Focal adhesion kinase 1 Q00944 FAK1_CHICK Gallus gallus 3 0.7253
L-methionine gamma-lyase Q84AR1 Q84AR1_CITFR Citrobacter freundii 3 0.7247
Serine/threonine-protein kinase Chk1 O14757 CHK1_HUMAN Homo sapiens 3 0.7246
Multidrug efflux pump subunit AcrB P31224 ACRB_ECOLI Escherichia coli 3 0.7222
Serine/threonine-protein kinase Nek2 P51955 NEK2_HUMAN Homo sapiens 3 0.7219
Protein mono-ADP-ribosyltransferase PARP3 Q9Y6F1 PARP3_HUMAN Homo sapiens 3 0.7218
Focal adhesion kinase 1 Q00944 FAK1_CHICK Gallus gallus 3 0.7214
Angiotensin-converting enzyme 2 Q9BYF1 ACE2_HUMAN Homo sapiens 2 0.7208
Aminoglycoside 3'-phosphotransferase AphA1-IAB B0VD92 B0VD92_ACIBY Acinetobacter baumannii 3 0.7207
Steroid Delta-isomerase P00947 SDIS_COMTE Comamonas testosteroni 3 0.7205
Homoserine dehydrogenase P31116 DHOM_YEAST Saccharomyces cerevisiae 3 0.7204
Retinoic acid receptor RXR-alpha P19793 RXRA_HUMAN Homo sapiens 3 0.7201
Gag-Pol polyprotein P03367 POL_HV1BR Human immunodeficiency virus type 1 group M subtype B 3 0.7198
Eukaryotic translation initiation factor 4E type 3 Q9DBB5 IF4E3_MOUSE Mus musculus 3 0.7189
Biphenyl-2,3-diol 1,2-dioxygenase P17297 BPHC_PSES1 Pseudomonas sp 3 0.7152
HTH-type transcriptional regulator EthR P9WMC1 ETHR_MYCTU Mycobacterium tuberculosis 3 0.7141
Peptidyl-prolyl cis-trans isomerase FKBP5 Q13451 FKBP5_HUMAN Homo sapiens 3 0.7108
Cyclin-dependent kinase 9 P50750 CDK9_HUMAN Homo sapiens 3 0.7106
Beta-galactoside-specific lectin 4 Q6ITZ3 ML4_VISAL Viscum album 2 0.7099
Neuropilin-1 O14786 NRP1_HUMAN Homo sapiens 3 0.7089
Dihydroflavonol 4-reductase P51110 DFRA_VITVI Vitis vinifera 3 0.7089
Nitric oxide synthase oxygenase O34453 NOSO_BACSU Bacillus subtilis 3 0.7078
Fibroblast growth factor receptor 2 P21802 FGFR2_HUMAN Homo sapiens 3 0.7072
Thymidylate synthase P00469 TYSY_LACCA Lacticaseibacillus casei 2 0.7066
Type II methyltransferase M.TaqI P14385 MTTA_THEAQ Thermus aquaticus 3 0.7057
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7051
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 2 0.7049
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 3 0.7033
16S rRNA (guanine(1405)-N(7))-methyltransferase Q763K9 Q763K9_ECOLX Escherichia coli 3 0.7032
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 3 0.7027
Serine/threonine-protein kinase pim-1 P11309 PIM1_HUMAN Homo sapiens 3 0.7023
Serine/threonine-protein kinase SKY1 Q03656 SKY1_YEAST Saccharomyces cerevisiae 2 0.7020
Tyrosine-protein kinase JAK2 O60674 JAK2_HUMAN Homo sapiens 2 0.7014
Nuclear receptor ROR-beta P45446 RORB_RAT Rattus norvegicus 2 0.7013
Pteridine reductase 1 Q01782 PTR1_LEIMA Leishmania major 3 0.7008

Download SDF