1,3,6-trihydroxy-7-methoxy-2,8-diprenylxanthone - Compound Card

1,3,6-trihydroxy-7-methoxy-2,8-diprenylxanthone

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1,3,6-trihydroxy-7-methoxy-2,8-diprenylxanthone

Structure
Zoomed Structure
  • Family: Plantae - Guttiferae
  • Kingdom: Plantae
  • Class: Xanthone
Canonical Smiles COc1c(O)cc2c(c1CC=C(C)C)c(=O)c1c(o2)cc(c(c1O)CC=C(C)C)O
InChI InChI=1S/C24H26O6/c1-12(2)6-8-14-16(25)10-19-21(22(14)27)23(28)20-15(9-7-13(3)4)24(29-5)17(26)11-18(20)30-19/h6-7,10-11,25-27H,8-9H2,1-5H3
InChIKey GNRIZKKCNOBBMO-UHFFFAOYSA-N
Formula C24H26O6
HBA 6
HBD 3
MW 410.47
Rotatable Bonds 5
TPSA 100.13
LogP 5.09
Number Rings 3
Number Aromatic Rings 3
Heavy Atom Count 30
Formal Charge 0
Fraction CSP3 0.29
Exact Mass 410.17
Number of Lipinski Rule Violations 1
# Species Family Kingdom NCBI Taxonomy ID
1 Pentadesma butyracea Clusiaceae Plantae 198785
2 Pentadesma butyracea Clusiaceae Plantae 198785
3 Allanblackia monticola Guttiferae Plantae 1508190
4 Allanblackia floribunda Guttiferae Plantae 469914

Showing of synonyms

  • Azebaze AG, Teinkela JE, et al. (2015). Antiplasmodial activity of some phenolic compounds from Cameroonians Allanblackia.. African health sciences,2015, 15(3), 835-840. [View] [PubMed]
  • Lenta BN, Kamdem LM, et al. (2011). Antiplasmodial constituents from the fruit pericarp of Pentadesma butyracea.. Planta medica,2011, 77(4), 377-379. [View] [PubMed]
  • Menasria F, Azebaze AG, et al. (2008). Apoptotic effects on B-cell chronic lymphocytic leukemia (B-CLL) cells of heterocyclic compounds isolated from Guttiferaes.. Leukemia research,2008, 32(12), 1914-1926. [View] [PubMed]
  • Zelefack F, Guilet D, et al. (2009). Cytotoxic and antiplasmodial xanthones from Pentadesma butyracea.. Journal of natural products,2009, 72(5), 954-957. [View] [PubMed]
Pubchem: 5281650
Kegg Ligand: C10080
Chebi: 67547
Nmrshiftdb2: 60025318
Metabolights: MTBLC67547
Pdb Ligand: MKS
Bindingdb: 50214969
CPRiL: 55355
Structure

SMILES: c1cccc(c12)oc3c(c2=O)cccc3

Level: 0

Mol. Weight: 410.47 g/mol

Anti-plasmodial

Absorption

Caco-2 (logPapp)
-5.26
Human Oral Bioavailability 20%
Bioavailable
Human Intestinal Absorption
Absorbed
Madin-Darby Canine Kidney
-4.870
Human Oral Bioavailability 50%
Bioavailable
P-Glycoprotein Inhibitor
Inhibitor
P-Glycoprotein Substrate
Non-Substrate
Skin Permeability
-0.96

Distribution

Blood-Brain Barrier (CNS)
-
Blood-Brain Barrier
Penetrable
Fraction Unbound (Human)
1.090
Plasma Protein Binding
56.73
Steady State Volume of Distribution
-

Metabolism

Breast Cancer Resistance Protein
Inhibitor
CYP 1A2 Inhibitor
Inhibitor
CYP 1A2 Substrate
Non-Substrate
CYP 2C19 Inhibitor
Inhibitor
CYP 2C19 Substrate
Non-Substrate
CYP 2C9 Inhibitor
Inhibitor
CYP 2C9 Substrate
Substrate
CYP 2D6 Inhibitor
Inhibitor
CYP 2D6 Substrate
Non-Substrate
CYP 3A4 Inhibitor
Non-Inhibitor
CYP 3A4 Substrate
Non-Substrate
OATP1B1
Inhibitor
OATP1B3
Non-Inhibitor

Excretion

Clearance
5.350
Organic Cation Transporter 2
Inhibitor
Half-Life of Drug
-

Toxicity

AMES Mutagenesis
Safe
Avian
Safe
Bee
Toxic
Bioconcentration Factor
1.040
Biodegradation
Safe
Carcinogenesis
Safe
Crustacean
Toxic
Liver Injury I (DILI)
Toxic
Eye Corrosion
Safe
Eye Irritation
Safe
Maximum Tolerated Dose
0.700
Liver Injury II
Toxic
hERG Blockers
Safe
Daphnia Maga
6.540
Micronucleos
Toxic
NR-AhR
Toxic
NR-AR
Safe
NR-AR-LBD
Safe
NR-Aromatase
Safe
NR-ER
Safe
NR-ER-LBD
Safe
NR-GR
Safe
NR-PPAR-gamma
Safe
NR-TR
Safe
T. Pyriformis
-13.200
Rat (Acute)
2.160
Rat (Chronic Oral)
3.260
Fathead Minnow
5.740
Respiratory Disease
Toxic
Skin Sensitisation
Safe
SR-ARE
Toxic
SR-ATAD5
Safe
SR-HSE
Safe
SR-MMP
Toxic
SR-p53
Toxic

General Properties

Boiling Point
491.950
Hydration Free Energy
-7.280
Log(D) at pH=7.4
3.340
Log(P)
6.73
Log S
-5.8
Log(Vapor Pressure)
-8.65
Melting Point
204.18
pKa Acid
8.54
pKa Basic
7.4
Protein Name UniProt ID Entry Name Species #Pharmacophore Points Probability (0.7 ≤ Tversky Score ≤ 1.0)
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.9195
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.9168
Epidermal growth factor receptor P00533 EGFR_HUMAN Homo sapiens 3 0.9074
NADPH-dependent oxidoreductase 2-alkenal reductase Q39172 AER_ARATH Arabidopsis thaliana 3 0.8692
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 4 0.8642
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.8640
3'-5' exoribonuclease Rv2179c P9WJ73 EXRBN_MYCTU Mycobacterium tuberculosis 3 0.8640
Bromodomain-containing protein 2 P25440 BRD2_HUMAN Homo sapiens 3 0.8619
Carbonyl reductase [NADPH] 1 P16152 CBR1_HUMAN Homo sapiens 3 0.8496
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase Q9TQS6 DHDH_MACFA Macaca fascicularis 3 0.8382
Homoserine dehydrogenase P31116 DHOM_YEAST Saccharomyces cerevisiae 4 0.8343
Carbonyl reductase [NADPH] 1 P16152 CBR1_HUMAN Homo sapiens 3 0.8276
Protein S100-A13 Q99584 S10AD_HUMAN Homo sapiens 3 0.8263
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 3 0.8254
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 3 0.8249
Nitric oxide synthase oxygenase O34453 NOSO_BACSU Bacillus subtilis 4 0.8228
Photosynthetic reaction center cytochrome c subunit P07173 CYCR_BLAVI Blastochloris viridis 3 0.8189
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.8159
Capsid protein Q9WBP8 Q9WBP8_9VIRU Adeno-associated virus - 1 3 0.8028
Genome polyprotein P26663 POLG_HCVBK Hepatitis C virus genotype 1b 4 0.8008
Casein kinase II subunit alpha P68400 CSK21_HUMAN Homo sapiens 4 0.7967
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7951
Serine/threonine-protein kinase 24 Q9Y6E0 STK24_HUMAN Homo sapiens 3 0.7943
Lactoylglutathione lyase Q9CPU0 LGUL_MOUSE Mus musculus 2 0.7913
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 3 0.7837
HTH-type transcriptional repressor PurR P0ACP7 PURR_ECOLI Escherichia coli 3 0.7832
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7774
Retinol dehydratase Q26490 Q26490_SPOFR Spodoptera frugiperda 3 0.7715
Soluble acetylcholine receptor Q8WSF8 Q8WSF8_APLCA Aplysia californica 3 0.7663
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform O02697 PK3CG_PIG Sus scrofa 3 0.7662
Uracil phosphoribosyltransferase Q26998 UPP_TOXGO Toxoplasma gondii 3 0.7624
Nucleoside permease Q9KPL5 Q9KPL5_VIBCH Vibrio cholerae serotype O1 4 0.7611
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7597
CmeR Q7B8P6 Q7B8P6_CAMJU Campylobacter jejuni 2 0.7580
Flavin-dependent monooxygenase Q93L51 TETX_BACT4 Bacteroides thetaiotaomicron 3 0.7566
Transcriptional regulator, PadR-like family A2RI36 A2RI36_LACLM Lactococcus lactis subsp. cremoris 2 0.7545
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 4 0.7517
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 4 0.7476
Tetracycline repressor protein class H P51561 TETR8_PASMD Pasteurella multocida 3 0.7473
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 3 0.7463
Aldo-keto reductase family 1 member B1 P15121 ALDR_HUMAN Homo sapiens 3 0.7459
Nitric oxide synthase, inducible P29477 NOS2_MOUSE Mus musculus 3 0.7435
Carbonyl reductase [NADPH] 1 P16152 CBR1_HUMAN Homo sapiens 3 0.7424
Polyribonucleotide nucleotidyltransferase A7ZS61 PNP_ECO24 Escherichia coli O139:H28 3 0.7416
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 4 0.7386
Basic phospholipase A2 VRV-PL-VIIIa P59071 PA2B8_DABRR Daboia russelii 2 0.7383
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 4 0.7380
Beta-secretase 1 P56817 BACE1_HUMAN Homo sapiens 3 0.7317
3',5'-cyclic-AMP phosphodiesterase 4D Q08499 PDE4D_HUMAN Homo sapiens 2 0.7301
Protein ppBat Q8A8A4 Q8A8A4_BACTN Bacteroides thetaiotaomicron VPI-5482 3 0.7298
Proto-oncogene tyrosine-protein kinase Src P00523 SRC_CHICK Gallus gallus 3 0.7284
Polymerase acidic protein C3W5S0 C3W5S0_I09A0 Influenza A virus 2 0.7234
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 2 0.7219
Peptidyl-prolyl cis-trans isomerase FKBP1A P62942 FKB1A_HUMAN Homo sapiens 3 0.7194
Chitinase A Q9AMP1 Q9AMP1_VIBHA Vibrio harveyi 2 0.7190
Aldo-keto reductase family 1 member C1 Q04828 AK1C1_HUMAN Homo sapiens 2 0.7190
Tyrosine-protein kinase Lck P06239 LCK_HUMAN Homo sapiens 3 0.7184
Lactotransferrin P24627 TRFL_BOVIN Bos taurus 2 0.7178
Steroid Delta-isomerase P07445 SDIS_PSEPU Pseudomonas putida 3 0.7177
Methionine aminopeptidase 2 P50579 MAP2_HUMAN Homo sapiens 3 0.7170
Adenylate cyclase type 5 P30803 ADCY5_CANLF Canis lupus familiaris 4 0.7152
Heat shock protein HSP 90-alpha P07900 HS90A_HUMAN Homo sapiens 4 0.7136
Streptogramin A acetyltransferase P50870 VATD_ENTFC Enterococcus faecium 3 0.7112
Steroid Delta-isomerase P00947 SDIS_COMTE Comamonas testosteroni 3 0.7109
Gag-Pol polyprotein P05896 POL_SIVM1 Simian immunodeficiency virus 3 0.7072
Angiotensin-converting enzyme 2 Q9BYF1 ACE2_HUMAN Homo sapiens 2 0.7070
S-adenosylmethionine decarboxylase proenzyme P17707 DCAM_HUMAN Homo sapiens 3 0.7068
Lactoperoxidase A0A452E9Y6 PERL_CAPHI Capra hircus 3 0.7065
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A O76083 PDE9A_HUMAN Homo sapiens 4 0.7063
Cyclin-dependent kinase 9 P50750 CDK9_HUMAN Homo sapiens 3 0.7061
Beta-lactamase Q9L5C8 Q9L5C8_ECOLX Escherichia coli 3 0.7046
Sulfotransferase 2B1 O00204 ST2B1_HUMAN Homo sapiens 3 0.7033
NAD(P)H dehydrogenase (quinone) Q9I509 NQOR_PSEAE Pseudomonas aeruginosa 5 0.7010
Carbonic anhydrase 2 P00918 CAH2_HUMAN Homo sapiens 2 0.7007

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