CovPDB

1

PDB: 1BVV

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase

Niallia circulans (Bacillus circul…

Uniprot: P09850 · XYNA_NIACI

Gene ID: xlnA

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3037

HET: DFX

2

PDB: 1C5I

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase

Niallia circulans (Bacillus circul…

Uniprot: P09850 · XYNA_NIACI

Gene ID: xlnA

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3037

HET: DFX

3

PDB: 1CI9

TYPE OF BINDING

Covalently Bound

Protein

Esterase EstB

Burkholderia gladioli (Pseudomonas…

Uniprot: Q9KX40 · ESTB_BURGA

Gene ID: estB

Ligand

DIISOPROPYL PHOSPHATE

Ligand ID: COVPDB690

HET: DFP

4

PDB: 1E0V

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase A

Streptomyces lividans

Uniprot: P26514 · XYNA_STRLI

Gene ID: xlnA

Ligand

2,4-DINITROPHENYL-2-DEOXY-2-FLUORO…

Ligand ID: COVPDB684

HET: G2F

5

PDB: 1E0X

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase A

Streptomyces lividans

Uniprot: P26514 · XYNA_STRLI

Gene ID: xlnA

Ligand

2,4-DINITROPHENYL-2-DEOXY-2-FLUORO…

Ligand ID: COVPDB684

HET: X2F

6

PDB: 1EKB

TYPE OF BINDING

Covalently Bound

Protein

Enteropeptidase

Bos taurus (Bovine)

Uniprot: P98072 · ENTK_BOVIN

Gene ID: TMPRSS15

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3273

HET: 0QE

7

PDB: 1EKB

TYPE OF BINDING

Covalently Bound

Protein

Enteropeptidase

Bos taurus (Bovine)

Uniprot: P98072 · ENTK_BOVIN

Gene ID: TMPRSS15

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3273

HET: LYK

8

PDB: 1EXP

TYPE OF BINDING

Covalently Bound

Protein

Exoglucanase/xylanase

Cellulomonas fimi

Uniprot: P07986 · GUX_CELFI

Gene ID: cex

Ligand

2,4-DINITROPHENYL-2-DEOXY-2-FLUORO…

Ligand ID: COVPDB684

HET: G2F

9

PDB: 1H11

TYPE OF BINDING

Covalently Bound

Protein

Endoglucanase 5A

Salipaludibacillus agaradhaerens (…

Uniprot: O85465 · GUN5_SALAG

Gene ID: cel5A

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3043

HET: G2F

10

PDB: 1H2J

TYPE OF BINDING

Covalently Bound

Protein

Endoglucanase 5A

Salipaludibacillus agaradhaerens (…

Uniprot: O85465 · GUN5_SALAG

Gene ID: cel5A

Ligand

2,4-DINITROPHENYL-2-DEOXY-2-FLUORO…

Ligand ID: COVPDB684

HET: DCB

11

PDB: 1HJ1

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor beta

Rattus norvegicus (Rat)

Uniprot: Q62986 · ESR2_RAT

Gene ID: Esr2

Ligand

PARA-MERCURY-BENZENESULFONIC ACID

Ligand ID: COVPDB2CYS5103

HET: PMB

12

PDB: 1QI2

TYPE OF BINDING

Covalently Bound

Protein

Endoglucanase 5A

Salipaludibacillus agaradhaerens (…

Uniprot: O85465 · GUN5_SALAG

Gene ID: cel5A

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3043

HET: G2F

13

PDB: 1R20

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Ecdysone receptor

Heliothis virescens (Tobacco budwo…

Uniprot: O18473 · ECR_HELVI

Gene ID: EcR

Ligand

N-(TERT-BUTYL)-3,5-DIMETHYL-N'-[(5…

Ligand ID: COVPDB2CYS3624

HET: HWG

14

PDB: 1RED

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase 2

Hypocrea jecorina (strain ATCC 567…

Uniprot: P36217 · XYN2_HYPJR

Gene ID: xyn2

Ligand

4,5-EPOXYPENTYL-BETA-D-XYLOSIDE

Ligand ID: COVPDB611

HET: C5X

15

PDB: 1REE

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase 2

Hypocrea jecorina (strain ATCC 567…

Uniprot: P36217 · XYN2_HYPJR

Gene ID: xyn2

Ligand

3,4‐epoxybutyl‐beta‐D‐xyloside

Ligand ID: COVPDB10

HET: 07E

16

PDB: 1REF

TYPE OF BINDING

Covalently Bound

Protein

Endo-1,4-beta-xylanase 2

Hypocrea jecorina (strain ATCC 567…

Uniprot: P36217 · XYN2_HYPJR

Gene ID: xyn2

Ligand

2,3-EPOXYPROPYL-BETA-D-XYLOSIDE

Ligand ID: COVPDB606

HET: C3X

17

PDB: 1S9P

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen-related receptor gamma

Mus musculus (Mouse)

Uniprot: P62509 · ERR3_MOUSE

Gene ID: Esrrg

Ligand

DIETHYLSTILBESTROL

Ligand ID: COVPDB2CYS2691

HET: DES

18

PDB: 1SJ0

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2S,3R)-2-(4-(2-(PIPERIDIN-1-YL)ET…

Ligand ID: COVPDB2CYS2835

HET: E4D

19

PDB: 1XKK

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Epidermal growth factor receptor

Homo sapiens (Human)

Uniprot: P00533 · EGFR_HUMAN

Gene ID: EGFR

Ligand

N-{3-CHLORO-4-[(3-FLUOROBENZYL)OXY…

Ligand ID: COVPDB2CYS3177

HET: FMM

20

PDB: 1XP1

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2S,3R)-2-(4-{2-[(3R,4R)-3,4-DIMET…

Ligand ID: COVPDB2CYS2165

HET: AIH

21

PDB: 1XP6

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2S,3R)-2-(4-{2-[(3R,4R)-3,4-DIMET…

Ligand ID: COVPDB2CYS2165

HET: AIU

22

PDB: 1XP9

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2S,3R)-3-(4-HYDROXYPHENYL)-2-(4-{…

Ligand ID: COVPDB2CYS2166

HET: AIJ

23

PDB: 1XPC

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2S,3R)-3-(4-HYDROXYPHENYL)-2-(4-{…

Ligand ID: COVPDB2CYS2166

HET: AIT

24

PDB: 1YIM

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Estrogen receptor

Homo sapiens (Human)

Uniprot: P03372 · ESR1_HUMAN

Gene ID: ESR1

Ligand

(2R,3R,4S)-3-(4-HYDROXYPHENYL)-4-M…

Ligand ID: COVPDB2CYS2553

HET: CM4

25

PDB: 2CIP

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Endoglucanase H

Acetivibrio thermocellus (strain A…

Uniprot: P16218 · GUNH_ACET2

Gene ID: celH

Ligand

4-METHYL-2H-CHROMEN-2-ONE

Ligand ID: COVPDB2CYS7087

HET: ZZ1

COMPLEXES