CovPDB

Human rhinovirus 2 (HRV-2)

Uniprot: P04936 · POLG_HRV2

Ligand

Rupintrivir

Ligand ID: COVPDB489

HET: AG7

4

PDB: 1CVR

TYPE OF BINDING

Covalently Bound

Protein

Gingipain R2

Porphyromonas gingivalis (strain A…

Uniprot: P95493 · CPG2_PORGI

Gene ID: rgpB

Ligand

FFRCK

Ligand ID: COVPDB887

HET: H37

5

PDB: 1DC4

TYPE OF BINDING

Covalently Bound

Protein

gylceraldehyde-3-phosphate

Escherichia coli (strain K12)

Uniprot: P0A9B2 · G3P1_ECOLI

Gene ID: gapA

Ligand

Ligand ID: COVPDB826

HET: G3P

6

PDB: 1DJO

TYPE OF BINDING

Covalently Bound

Protein

Glutaminase-asparaginase

Pseudomonas sp. (strain ATCC 29598…

Uniprot: P10182 · ASPQ_PSES7

Gene ID: ansB

Ligand

5-diazo-4-oxo-L-norvaline

Ligand ID: COVPDB622

HET: CAB

7

PDB: 1DJP

TYPE OF BINDING

Covalently Bound

Protein

Glutaminase-asparaginase

Pseudomonas sp. (strain ATCC 29598…

Uniprot: P10182 · ASPQ_PSES7

Gene ID: ansB

Ligand

6-diazo-5-oxo-l-norleucine

Ligand ID: COVPDB410

HET: DO2

8

PDB: 1DY8

TYPE OF BINDING

Covalently Bound

Protein

N-[(benzyloxy)carbonyl]-L-isoleucy…

Hepatitis C virus genotype 1b (iso…

Uniprot: P26662 · POLG_HCVJA

Ligand

Ligand ID: COVPDB2OR3272

HET: 0F7

9

PDB: 1DY9

TYPE OF BINDING

Covalently Bound

Protein

N-(tert-butoxycarbonyl)-L-alpha-gl…

Hepatitis C virus genotype 1b (iso…

Uniprot: P26662 · POLG_HCVJA

Ligand

Ligand ID: COVPDB169

HET: 2ZF

10

PDB: 1EUQ

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Glutamine--tRNA ligase

Escherichia coli (strain K12)

Uniprot: P00962 · SYQ_ECOLI

Gene ID: glnS

Ligand

5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]A…

Ligand ID: COVPDB2CYS5385

HET: QSI

11

PDB: 1GYQ

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

N6-BENZYL-NICOTINAMIDE-ADENINE-DIN…

Leishmania mexicana

Uniprot: Q27890 · G3PG_LEIME

Gene ID: GAPG

Ligand

Ligand ID: COVPDB2CYS4623

HET: NBD

12

PDB: 1HDK

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Galectin-10

Homo sapiens (Human)

Uniprot: Q05315 · LEG10_HUMAN

Gene ID: CLC

Ligand

PARA-MERCURY-BENZENESULFONIC ACID

Ligand ID: COVPDB2CYS5103

HET: PMB

13

PDB: 1HRV

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

1-[2-HYDROXY-3-(4-CYCLOHEXYL-PHENO…

Human rhinovirus 14 (HRV-14)

Uniprot: P03303 · POLG_HRV14

Ligand

Ligand ID: COVPDB2CYS5706

HET: SDZ

14

PDB: 1HTP

TYPE OF BINDING

Covalently Bound

Protein

Glycine cleavage system H protein,…

Pisum sativum (Garden pea)

Uniprot: P16048 · GCSH_PEA

Gene ID: GDCSH

Ligand

6-(HYDROXYETHYLDITHIO)-8-(AMINOMET…

Ligand ID: COVPDB1196

HET: OSS

15

PDB: 1IAU

TYPE OF BINDING

Covalently Bound

Protein

Granzyme B

Homo sapiens (Human)

Uniprot: P10144 · GRAB_HUMAN

Gene ID: GZMB

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3285

HET: ASJ

16

PDB: 1IHX

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

THIONICOTINAMIDE-ADENINE-DINUCLEOT…

Panulirus versicolor (Painted spin…

Uniprot: P56649 · G3P_PANVR

Ligand

Ligand ID: COVPDB2CYS5751

HET: SND

17

PDB: 1JKH

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

(-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-…

Human immunodeficiency virus type …

Uniprot: P04585 · POL_HV1H2

Gene ID: gag-pol

Ligand

Ligand ID: COVPDB2CYS2923

HET: EFZ

18

PDB: 1JLA

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPR…

Human immunodeficiency virus type …

Uniprot: P04585 · POL_HV1H2

Gene ID: gag-pol

Ligand

Ligand ID: COVPDB2CYS5941

HET: TNK

19

PDB: 1JLB

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

11-CYCLOPROPYL-5,11-DIHYDRO-4-METH…

Human immunodeficiency virus type …

Uniprot: P04585 · POL_HV1H2

Gene ID: gag-pol

Ligand

Ligand ID: COVPDB2CYS4726

HET: NVP

20

PDB: 1JLC

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

N-[[3-FLUORO-4-ETHOXY-PYRID-2-YL]E…

Human immunodeficiency virus type …

Uniprot: P04585 · POL_HV1H2

Gene ID: gag-pol

Ligand

Ligand ID: COVPDB2CYS3229

HET: FTC

21

PDB: 1K5M

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Gastric triacylglycerol lipase

Human rhinovirus 14 (HRV-14)

Uniprot: P03303 · POLG_HRV14

Ligand

SPHINGOSINE

Ligand ID: COVPDB2CYS5761

HET: SPH

22

PDB: 1K8Q

TYPE OF BINDING

Covalently Bound

Protein

Canis lupus familiaris (Dog) (Cani…

Uniprot: P80035 · LIPF_CANLF

Gene ID: LIPF

Ligand

Unknown Ligand Name

Ligand ID: COVPDB2OR3288

HET: C11

23

PDB: 1LTX

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Geranylgeranyl transferase type-2 …

Rattus norvegicus (Rat)

Uniprot: Q08603 · PGTB2_RAT

Gene ID: Rabggtb

Ligand

FARNESYL

Ligand ID: COVPDB2CYS3121

HET: FAR

24

PDB: 1ML3

TYPE OF BINDING

Covalently Bound

Protein