CovPDB

3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS4644

HET: NGT

4

PDB: 2E6Y

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

Ligand ID: COVPDB1411

HET: U5P

5

PDB: 2E6Y

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

Ligand ID: COVPDB1411

HET: U5P

6

PDB: 2J4G

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

(3AR,5R,6S,7R,7AR)-5-(HYDROXYMETHY…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS4618

HET: NB1

7

PDB: 2JIW

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

N-[(1S,2R,5R,6R)-2-AMINO-5,6-DIHYD…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS2346

HET: BEU

8

PDB: 2OTC

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

Ornithine carbamoyltransferase sub…

Escherichia coli (strain K12)

Uniprot: P04391 · OTC1_ECOLI

Gene ID: argI

Ligand

N-(PHOSPHONOACETYL)-L-ORNITHINE

Ligand ID: COVPDB2CYS5042

HET: PAO

9

PDB: 2QAF

TYPE OF BINDING

Covalently Bound

Protein

Orotidine-5'-phosphate decarboxyla…

Plasmodium falciparum (isolate 3D7)

Uniprot: Q8IJH3 · Q8IJH3_PLAF7

Gene ID: PF3D7_1023200

Ligand

Ornithine decarboxylase

Ligand ID: COVPDB1411

HET: U5P

10

PDB: 2TOD

TYPE OF BINDING

Covalently Bound

Protein

Trypanosoma brucei brucei

Uniprot: P07805 · DCOR_TRYBB

Ligand

ALPHA-DIFLUOROMETHYLORNITHINE

Ligand ID: COVPDB709

HET: DMO

11

PDB: 2W66

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

N-[(3R,4S,5R,6R,7R)-3,5,6-trihydro…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS3589

HET: HQ6

12

PDB: 2W67

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

N-[(3S,4R,5R,6R)-4,5,6-trihydroxya…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS3071

HET: F34

13

PDB: 2WCA

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

[[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS4675

HET: NP6

14

PDB: 2WZH

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

2-METHYL-4,5-DIHYDRO-(1,2-DIDEOXY-…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS4642

HET: NGO

15

PDB: 2WZI

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

(3AS,5S,6S,7R,7AR)-5-FLUORO-5-(HYD…

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS1085

HET: 5FN

16

PDB: 2XJ7

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE

Bacteroides thetaiotaomicron (stra…

Uniprot: Q89ZI2 · OGA_BACTN

Gene ID: BT_4395

Ligand

Ligand ID: COVPDB2CYS3334

HET: GC2

17

PDB: 2XPK

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein

O-GlcNAcase NagJ

Clostridium perfringens (strain AT…

Uniprot: Q0TR53 · OGA_CLOP1

Gene ID: nagJ

Ligand

N-[(5R,6R,7R,8S)-6,7-DIHYDROXY-5-(…

Ligand ID: COVPDB2CYS6960

HET: Z0M

18

PDB: 2ZZ3

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

6-cyano-UMP

Ligand ID: COVPDB307

HET: 6CN

19

PDB: 2ZZ4

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

6-cyano-UMP

Ligand ID: COVPDB307

HET: 6CN

20

PDB: 2ZZ6

TYPE OF BINDING

Covalently Bound

Protein

Orotidine-5'-phosphate decarboxyla…

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

6-azido-UMP

Ligand ID: COVPDB302

HET: 6AZ

21

PDB: 3BAR

TYPE OF BINDING

Covalently Bound

Protein

Plasmodium falciparum (isolate 3D7)

Uniprot: Q8IJH3 · Q8IJH3_PLAF7

Gene ID: PF3D7_1023200

Ligand

Orotidine-5'-phosphate decarboxyla…

Ligand ID: COVPDB1411

HET: U5P

22

PDB: 3MWA

TYPE OF BINDING

Covalently Bound

Protein

Plasmodium falciparum (isolate 3D7)

Uniprot: Q8IJH3 · Q8IJH3_PLAF7

Gene ID: PF3D7_1023200

Ligand

2'-deoxy-2'-fluoro-6-iodo-UMP

Ligand ID: COVPDB1416

HET: UFT

23

PDB: 3SGU

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

5-FLUORO-UMP

Ligand ID: COVPDB263

HET: 5FU

24

PDB: 3SW6

TYPE OF BINDING

Covalently Bound

Protein

Methanothermobacter thermautotroph…

Uniprot: O26232 · PYRF_METTH

Gene ID: pyrF

Ligand

5-FLUORO-UMP

Ligand ID: COVPDB263

HET: 5FU

25

PDB: 4AIU

TYPE OF BINDING

Non-Covalently Bound
Near To Cysteines

Protein